Factsheet for TraesCS2B01G306600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G290100.1	Wheat	cytosol	96.28	96.28
TraesCS2D01G288000.1	Wheat	cytosol	95.36	95.36
Os04t0402500-00	Rice	cytosol	56.66	57.91
TraesCS2B01G306500.1	Wheat	cytosol	57.28	57.1
OQU81469	Sorghum	cytosol	50.46	48.37
EES12084	Sorghum	cytosol, nucleus, plastid	43.65	48.12
Zm00001d025310_P001	Maize	cytosol	47.68	47.98
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	47.99	46.97
OQU81471	Sorghum	mitochondrion	47.99	41.01
GSMUA_Achr10P...	Banana	nucleus	33.13	33.65
GSMUA_Achr6P16260_001	Banana	nucleus	33.13	31.75
TraesCS3B01G484600.1	Wheat	cytosol	24.77	29.09
GSMUA_Achr6P08300_001	Banana	plastid	30.96	28.9
TraesCS4B01G019600.1	Wheat	mitochondrion	25.39	26.45
TraesCS6B01G149100.1	Wheat	nucleus	20.74	25.48
TraesCS7B01G340500.1	Wheat	mitochondrion	24.46	25.08
TraesCS7B01G340600.1	Wheat	mitochondrion	23.84	24.68
TraesCS1B01G228800.1	Wheat	cytosol	24.46	24.23
TraesCS6B01G289500.1	Wheat	nucleus	25.08	23.96
TraesCS7B01G340700.1	Wheat	mitochondrion	22.91	23.72
TraesCS4B01G215100.1	Wheat	plastid	22.6	21.53
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	21.98	20.34

Protein Annotations

EnsemblPlants:TraesCS2B01G306600.1	EnsemblPlantsGene:TraesCS2B01G306600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	PFAM:PF13920	PFscan:PS50089
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:438458662..438459753

Molecular Weight (calculated)

34050.2 Da

IEP (calculated)

5.824

GRAVY (calculated)

-0.180

Length

323 amino acids

Sequence
(BLAST)

001: MAVQAQNLSH AFPHDLHAYN SVSALEDEMT GGSLFFPENL KRGPELDAAG NTLFGDVPRV DPTWHDNTTR SHGIVQRKRA RVVPEAPSYL ENQRGQGRVP
101: VGDLLTRAVG SGTASTSGRM INAAGPPPDL LSQLYRQGME IDAVLRLETD RMRAGLEEAR QQHVTALVSA AERAAARQLR AAEAALELAR CRNAKLSERL
201: TQICAEGQAW IRVAKSHEAV AAGLQATLDQ LLQSPCAAVA ATGADGDGDA EDARSCCFET PAGDDAAASK ASAAACRACG EGESCVLLLP CRHLCLCSAC
301: DAAVDTCPLC ATTKNASLHV LLS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.