Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16595579
plastid: 18419817 plastid: 22160430 plastid: 22736107 golgi: 25769308 |
msms PMID:
22736107
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G466700.1 | Wheat | plastid | 99.51 | 99.51 |
| TraesCS5D01G468400.1 | Wheat | plastid | 99.02 | 99.51 |
| EER93246 | Sorghum | plastid | 83.9 | 85.57 |
| Os08t0560900-01 | Rice | extracellular, plastid | 84.39 | 85.22 |
| Zm00001d034543_P001 | Maize | plastid | 79.51 | 81.91 |
| KRG91274 | Soybean | nucleus, plastid | 73.66 | 74.38 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 73.66 | 72.95 |
| KRH35533 | Soybean | plastid | 74.63 | 72.86 |
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 72.68 | 71.98 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 71.71 | 71.01 |
| Solyc06g054260.1.1 | Tomato | plastid | 71.71 | 70.67 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 70.24 | 70.59 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 69.76 | 70.1 |
| Zm00001d013039_P001 | Maize | plastid | 78.05 | 67.8 |
| AT4G02770.1 | Thale cress | plastid | 68.78 | 67.79 |
| AT1G03130.1 | Thale cress | plastid | 67.32 | 67.65 |
| CDY22079 | Canola | plastid | 43.9 | 60.0 |
| CDY21916 | Canola | plastid | 71.22 | 51.96 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 69.27 | 51.82 |
| Bra036240.1-P | Field mustard | plastid | 70.24 | 51.61 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G457500.1 | EnsemblPlantsGene:TraesCS5A01G457500 | Gene3D:3.30.1470.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009538 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | InterPro:PsaD | InterPro:PsaD_sf | PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 |
| PFAM:PF02531 | SEG:seg | SUPFAM:SSF64234 | MapMan:1.1.4.2.4 | : | : |
Description
No Description!
Coordinates
chr5A:+:637167587..637168204
Molecular Weight (calculated)
21890.3 Da
IEP (calculated)
10.231
GRAVY (calculated)
-0.295
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMATQASAA TRHLITAAWS PSAKPRPATL AMPSSARGPA PLCAAAPDTP APAAPPAEPA PAGFVPPQLD PSTPSPIFGG STGGLLRKAQ VEEFYVITWT
101: SPKEQVFEMP TGGAAIMREG PNLLKLARKE QCLALGNRLR SKYKIAYQFY RVFPNGEVQY LHPKDGVYPE KVNAGRQGVG QNFRSIGKNV SPIEVKFTGK
201: NSFDI
101: SPKEQVFEMP TGGAAIMREG PNLLKLARKE QCLALGNRLR SKYKIAYQFY RVFPNGEVQY LHPKDGVYPE KVNAGRQGVG QNFRSIGKNV SPIEVKFTGK
201: NSFDI
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
Arabidopsis Description
PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.