Factsheet for TraesCS6D01G237000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G255800.1	Wheat	nucleus	99.0	99.0
TraesCS6B01G269700.1	Wheat	nucleus	98.88	98.88
HORVU6Hr1G065300.3	Barley	nucleus	97.39	97.88
Os02t0674800-01	Rice	nucleus	86.57	86.57
Zm00001d040090_P002	Maize	nucleus	81.72	81.82
EES02604	Sorghum	nucleus	82.84	81.72
Zm00001d040091_P001	Maize	nucleus	24.75	76.25
GSMUA_Achr1P18760_001	Banana	nucleus	61.32	65.21
CDY18903	Canola	nucleus	56.84	64.82
CDX74762	Canola	nucleus	56.84	64.55
VIT_15s0048g02000.t01	Wine grape	nucleus	63.93	63.38
KRH40539	Soybean	nucleus	64.43	63.17
KRH00641	Soybean	nucleus	64.05	62.65
Bra004934.1-P	Field mustard	nucleus	60.2	61.58
KRH48236	Soybean	nucleus	63.31	61.4
PGSC0003DMT400071377	Potato	nucleus	62.44	61.14
Solyc01g091630.2.1	Tomato	nucleus	62.31	61.02
CDY51143	Canola	nucleus	59.45	60.51
Bra037355.1-P	Field mustard	nucleus	59.45	60.51
CDX67855	Canola	nucleus	58.46	60.26
AT4G00730.1	Thale cress	nucleus	59.95	60.1
CDY45684	Canola	nucleus	58.58	60.08
KRH65144	Soybean	nucleus	62.44	60.05
CDX74347	Canola	nucleus	59.08	59.9
CDY07201	Canola	nucleus	58.71	59.9
Bra003439.1-P	Field mustard	nucleus	58.46	59.87
CDX91894	Canola	nucleus	58.96	59.7
PGSC0003DMT400019986	Potato	nucleus	59.2	58.84
AT3G61150.1	Thale cress	nucleus	58.83	58.54
GSMUA_Achr3P12410_001	Banana	nucleus	53.61	58.09
TraesCS2D01G398600.1	Wheat	nucleus	56.09	57.53
TraesCS5D01G320600.1	Wheat	nucleus	58.83	55.71
TraesCS2D01G473700.1	Wheat	nucleus	47.51	49.23
TraesCS7D01G305200.1	Wheat	nucleus	47.76	48.24
TraesCS6D01G304300.1	Wheat	nucleus	40.3	47.3
TraesCS7D01G169000.1	Wheat	nucleus	7.71	41.61
TraesCS7D01G168700.1	Wheat	nucleus	37.81	41.53
TraesCS7D01G168900.1	Wheat	nucleus	7.59	40.94
TraesCS4D01G228800.1	Wheat	nucleus	9.95	37.38
TraesCS1D01G197300.1	Wheat	nucleus	37.94	34.54
TraesCS3D01G121300.1	Wheat	nucleus	8.83	34.13
TraesCS1D01G037100.1	Wheat	nucleus	8.96	33.8
TraesCS3D01G296500.3	Wheat	nucleus	33.08	33.5
TraesCS3D01G121500.1	Wheat	nucleus	8.83	31.84
TraesCS5D01G335900.1	Wheat	nucleus	29.1	31.08
TraesCS7D01G217200.1	Wheat	nucleus	8.46	30.49
TraesCS3D01G319200.1	Wheat	nucleus	25.75	30.31
TraesCS4D01G082600.1	Wheat	nucleus	29.48	29.44
TraesCS3D01G121400.1	Wheat	golgi, nucleus	9.2	19.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS6D01G237000	EnsemblPlants:TraesCS6D01G237000.1	TIGR:cd00086	TIGR:cd08875
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:335062906..335068647

Molecular Weight (calculated)

86470.5 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.184

Length

804 amino acids

Sequence
(BLAST)

001: MSFGGLFDGG GGGGGMQFPY AGAFSSSPAL SLGLDNAGAR DGGIGGRMFA DGAGGAMARD AEAQNDSRSG SDHLDAISGV GDDDDDAEPS GSNPRKRKKR
101: YHRHTPQQIQ ELEALFKECP HPDEKQRAEL SKRLSLDARQ VKFWFQNRRT QMKTQLERHE NALLKQENEK LRTENLTIRE AMRTPMCGGC GSPAMLGEVS
201: LEEQHLRIEN ARLKDELNRV CTLATKFLGK PVSLLSPLQL QPHLSMPLPN SSLELAVGGI GGIGSMQPSM HGMMSEYAGG ASSSMGTVIT PARATGPALA
301: SMVDIDRSVF LELAISAMDE LVKMAQTDDP LWVTGSPGFP DKESLNFEEY LHSSQHCIGM KPVGFVSEAS RESGLVIIDN SVALVETLMD ERRWSDMFSC
401: MIAKATILEE VSNGIGGSRN GALLLMKAEL QVLSPLVPIR EVIFLRFCKQ LAEDAWAVVD VSIDGLLSNQ NSAATSAGSN LKCRRLPSGC VMQDTPNGYC
501: KVTWVEHTEY DEASVHQFYR PLLRSGLAFG ASRWLATLQR QCECLAILMS SATVSPNEPT AISQEGKRSM LKLARRMTEN FCAGVSASSA REWSKLDGAT
601: GSIAEDVRVM ARKSVSEPGE PPGVVLSAAT SVWVPIAPEK LFDFLRDEQL RAEWDILSNG GPMQEMARIA KGHQNGNSVS LLRASAMSAN QSSMLILQET
701: CTDASGSIVV YAPVDIPAMQ LVMNGGDSTY VALLPSGFAI LPDGPSIGSE HKTGGSLLTV AFQILVNSQP TAKLTVESVE TVNNLISCTI KKIKTALQCA
801: TPEC

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.