Factsheet for TraesCS3D01G296500.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G305300.1	Wheat	nucleus	82.87	86.47
TraesCS3B01G331200.1	Wheat	nucleus	82.12	86.36
HORVU3Hr1G073290.1	Barley	nucleus	68.89	83.38
HORVU0Hr1G006920.1	Barley	nucleus	10.2	81.82
OQU87592	Sorghum	nucleus	48.61	54.29
VIT_09s0002g04340.t01	Wine grape	nucleus	49.37	52.27
GSMUA_Achr3P15400_001	Banana	nucleus	49.24	52.2
KRH09884	Soybean	plastid	47.98	50.73
KRH23432	Soybean	plastid	48.36	50.39
KRH47277	Soybean	nucleus	47.61	50.33
GSMUA_Achr8P27340_001	Banana	nucleus	46.73	49.53
KRH44348	Soybean	nucleus	46.35	49.2
Bra003535.1-P	Field mustard	nucleus	45.34	48.0
PGSC0003DMT400006770	Potato	nucleus	45.97	47.28
Solyc03g120620.2.1	Tomato	nucleus	46.1	47.23
CDX79408	Canola	nucleus	45.47	46.28
CDX67929	Canola	nucleus	45.47	46.1
AT1G79840.2	Thale cress	nucleus, plastid	44.58	45.62
Os01t0760800-00	Rice	nucleus	7.56	44.78
TraesCS2D01G473700.1	Wheat	nucleus	33.12	33.89
TraesCS6D01G304300.1	Wheat	nucleus	29.22	33.87
TraesCS7D01G305200.1	Wheat	nucleus	33.88	33.79
TraesCS6D01G237000.1	Wheat	nucleus	33.5	33.08
TraesCS5D01G320600.1	Wheat	nucleus	32.62	30.51
TraesCS2D01G398600.1	Wheat	nucleus	29.85	30.23
TraesCS7D01G168700.1	Wheat	nucleus	27.58	29.92
TraesCS7D01G169000.1	Wheat	nucleus	5.29	28.19
TraesCS7D01G168900.1	Wheat	nucleus	5.16	27.52
TraesCS1D01G197300.1	Wheat	nucleus	29.85	26.84
TraesCS1D01G037100.1	Wheat	nucleus	7.18	26.76
TraesCS5D01G335900.1	Wheat	nucleus	24.43	25.76
TraesCS3D01G319200.1	Wheat	nucleus	21.16	24.6
TraesCS4D01G228800.1	Wheat	nucleus	6.42	23.83
TraesCS3D01G121300.1	Wheat	nucleus	6.05	23.08
TraesCS7D01G217200.1	Wheat	nucleus	6.3	22.42
TraesCS4D01G082600.1	Wheat	nucleus	21.28	20.99
TraesCS3D01G121500.1	Wheat	nucleus	5.54	19.73
TraesCS3D01G121400.1	Wheat	golgi, nucleus	6.3	12.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009653	GO:GO:0009957	GO:GO:0009987	GO:GO:0010062	GO:GO:0030154	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF272	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS3D01G296500	EnsemblPlants:TraesCS3D01G296500.3	TIGR:cd00086	TIGR:cd08875	SEG:seg

Description

No Description!

Coordinates

chr3D:-:410412719..410416215

Molecular Weight (calculated)

86104.9 Da

IEP (calculated)

9.177

GRAVY (calculated)

-0.423

Length

794 amino acids

Sequence
(BLAST)

001: MGSSRPRTKD FFAAPTLSLS LAGAFARKAP SGDEVEEGEE GSVGVRSGPP GGEVDVSSEN TGPAGSQSGD GSGEEEEGHA DGGKRKKRSR KSYHRHTSEQ
101: VRVMEAVFKE SPHPDEKQRQ QLSKQLGLSP RQVKFWFQNR RTQIKCVRSG DSGAARELAA QVRAGESPEG EPRHETACQG TLTLPKLRRR SSLDRWLRRR
201: RSQPRTAAAA GERQAQSRGS CRCPANAAFG RVRSAGANQK LMLWKWNPFQ VEKLRRALGT AAADGAASPA SPPFSAATAQ MSSNRSPFEV YGGGLAGRDR
301: QSVLGLAGRA LEELKTMCSS GEPLWVRSVE TGRDILNYDE YVRLFRRDDG PGDRRAGWSV EASRETGLVY LDATKLVYAF MDVNQWKELF PSMISKASTL
401: DVIRTRDDDD GHDGVVQLMF AEVQMLTPMI PTREFYFARY CKKLAAEKWV IVDVSFDKAE ADVGTSPLLT CWKNPSGCII EEQANGHSRV TWMEHTRCRE
501: CAVPSMYRAV TASGLAFGAR RWVATLQLQC ERMVFWVATN VPTRDNSGVS TLAGRRSVLK LAHRMTSSLC RVMGGSRGLA WSRAPRAGAG DVRLTSRTNA
601: GDPGEPQGLI ACAVLSTWLP VSPTALLDFL RDESRRPEWD VTLAGRAVQC RVNLTKGKDR CNCVTAYVSS RADGQGGEWV VQDSCTSPCE SIVAYAPVDA
701: AVLQPVISGH DSSGVALLPC GFAVVPDGLE ARPAVIRSRR EDGAAAGSLV TVAFQVLASS SPAAALSPES AETVTSLASC TLRRVKKALG CQDR

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.