CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09884	Soybean	plastid	94.36	95.74
VIT_09s0002g04340.t01	Wine grape	nucleus	80.58	81.87
KRH47277	Soybean	nucleus	80.58	81.76
KRH44348	Soybean	nucleus	78.48	79.95
PGSC0003DMT400006770	Potato	nucleus	70.21	69.3
GSMUA_Achr3P15400_001	Banana	nucleus	67.98	69.16
Solyc03g120620.2.1	Tomato	nucleus	69.29	68.13
Bra003535.1-P	Field mustard	nucleus	63.91	64.93
GSMUA_Achr8P27340_001	Banana	nucleus	63.52	64.62
Os01t0760800-00	Rice	nucleus	11.29	64.18
AT1G79840.2	Thale cress	nucleus, plastid	64.96	63.79
CDX79408	Canola	nucleus	63.91	62.44
CDX67929	Canola	nucleus	64.04	62.32
HORVU0Hr1G006920.1	Barley	nucleus	7.48	57.58
TraesCS3B01G331200.1	Wheat	nucleus	54.59	55.1
HORVU3Hr1G073290.1	Barley	nucleus	47.38	55.03
TraesCS3A01G305300.1	Wheat	nucleus	54.86	54.93
TraesCS3D01G296500.3	Wheat	nucleus	50.39	48.36
OQU87592	Sorghum	nucleus	44.88	48.1
KRH13175	Soybean	cytosol	10.5	45.2
KRH56105	Soybean	nucleus	42.52	44.44
KRH77881	Soybean	nucleus	41.34	43.09
KRH25398	Soybean	plastid	42.91	42.97
KRH27601	Soybean	nucleus	41.08	42.76
KRH40539	Soybean	nucleus	45.41	42.2
KRH22554	Soybean	nucleus	42.91	41.87
KRH26803	Soybean	nucleus	42.91	41.87
KRH00641	Soybean	nucleus	45.01	41.73
KRH35356	Soybean	nucleus	41.73	41.57
KRH48236	Soybean	nucleus	45.14	41.5
KRG91457	Soybean	nucleus	41.99	41.18
KRH65144	Soybean	nucleus	45.14	41.15
KRH41898	Soybean	nucleus	38.19	40.36
KRH38939	Soybean	nucleus	37.93	40.03
KRH60596	Soybean	nucleus	37.4	39.97
KRH09477	Soybean	nucleus	37.53	39.83
KRG91238	Soybean	nucleus	37.93	39.53
KRH09109	Soybean	plastid	39.63	38.97
KRH38560	Soybean	nucleus	39.37	38.66
KRH35579	Soybean	nucleus	37.93	37.15
KRH74360	Soybean	nucleus	37.01	35.74
KRH39579	Soybean	nucleus	37.27	35.5
KRH11810	Soybean	nucleus	30.84	32.96
KRH36826	Soybean	nucleus	30.71	32.82
KRH36827	Soybean	nucleus	30.05	32.3
KRH22254	Soybean	cytosol	22.31	31.78
KRH27078	Soybean	extracellular, golgi, peroxisome	13.12	30.3
KRH42428	Soybean	nucleus	28.61	28.8
KRH42429	Soybean	cytosol	24.28	25.34

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100808292	MapMan:15.5.3.3	UniProt:A0A0K2CTQ7	EMBL:ACUP02008465	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G357100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1M5J0	InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:KRH23432
ProteinID:KRH23432	ProteinID:KRH23432.1	EMBL:KT031171	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF482	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000233B52C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:44513995..44520662

Molecular Weight (calculated)

84244.0 Da

IEP (calculated)

6.189

GRAVY (calculated)

-0.400

Length

762 amino acids

Sequence
(BLAST)

001: MGADMSNNNN PPPTSHAKDL FASPALSLSL AGIFRHAGVA AADEAATSVE EGEEGSGGAA ERLEEISSEN SGPTRSRSED DFEGGEAEPE DDDDAHGDNK
101: NKKTKKKRKK YHRHTADQIR EMEALFKESP HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEIEK LKEKNKSLRE TINKACCPNC
201: GVPTTSRDGV MPTEEQQLRI ENAKLKAEVE KLRAALGKYA PGSTSPSCSS GHDQENRSSL DFYTGIFGLD KSRIMDIVNQ AMEELIKMAT VGEPLWLRSF
301: ETGREILNYD EYVKEFAVEN SSSSGKPKRS IEASRDTAVV FVDLPSLVQS FLDVNQWKEM FPCLISKAAT VDVICNGEGL SRNGAVQLMF AELQMLTPMV
401: PTREVYFVRF CKQLSAEQWA IVDVSIDKVE DNIDASLVKC RKRPSGCIIE DKSNGHCKVI WVEHSECQKS AVHSMYRTIV NSGLAFGARH WIATLQLQCE
501: RLVFFMATNV PMKDSTGVAT LAGRKSILKL AQRMTWSFCH AIGASSIHAW TKVTSKTGED IRISSRKNLN DPGEPLGLIL CAVCSVWLPV SPNVLFDFLR
601: DENRRTEWDI MSSGGTVQSI ANLAKGQDRG NAVAIQTIKL KENSVWILQD SCTNLYESMV AYACVDITGI QSVMTGCDSS NLAILPSGFS IIPDGLESRP
701: LVISSRQEEK NTEGGSLFTM AFQILTNASP TAKLTLESVD SVNTLVSCTL RNIRTSLQCE DG

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.