CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26803	Soybean	nucleus	98.34	98.34
KRH56105	Soybean	nucleus	86.81	93.0
KRH25398	Soybean	plastid	89.76	92.12
VIT_12s0059g02310.t01	Wine grape	nucleus	85.92	88.64
KRH13175	Soybean	cytosol	19.08	84.18
AT1G05230.5	Thale cress	nucleus	74.65	80.86
Bra015401.1-P	Field mustard	nucleus	74.52	80.83
CDY06167	Canola	nucleus	74.39	80.69
Bra032478.1-P	Field mustard	nucleus	74.26	80.67
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	66.71	78.94
CDY10041	Canola	nucleus	74.26	77.64
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	71.7	77.14
Os04t0627000-02	Rice	cytosol, peroxisome	57.11	76.11
KRH77881	Soybean	nucleus	69.14	73.87
CDY71572	Canola	nucleus	37.13	73.79
KRH27601	Soybean	nucleus	69.01	73.63
CDY49515	Canola	plasma membrane	75.42	72.63
EES11464	Sorghum	nucleus	73.24	72.5
GSMUA_Achr10P...	Banana	nucleus	65.3	71.33
EES13460	Sorghum	mitochondrion, nucleus	71.32	71.32
GSMUA_Achr11P...	Banana	plastid	71.7	70.98
CDY46842	Canola	nucleus	75.29	70.84
Zm00001d002234_P003	Maize	nucleus	71.45	70.28
Os08t0136100-01	Rice	nucleus	70.55	70.19
Zm00001d049443_P005	Maize	nucleus	71.32	69.97
TraesCS2B01G497500.1	Wheat	nucleus	69.01	69.55
TraesCS2D01G473700.1	Wheat	nucleus	69.01	69.46
TraesCS2A01G474000.1	Wheat	nucleus	69.01	69.37
TraesCS7B01G208600.1	Wheat	nucleus	68.5	67.04
TraesCS7A01G308400.1	Wheat	nucleus	68.12	66.83
Zm00001d026351_P003	Maize	nucleus	72.22	66.82
TraesCS7D01G305200.1	Wheat	nucleus	67.99	66.71
Zm00001d000247_P001	Maize	plasma membrane	60.82	66.06
EES14500	Sorghum	nucleus	67.86	65.11
Zm00001d024701_P001	Maize	nucleus	66.33	64.99
KRG91238	Soybean	nucleus	58.13	62.11
KRH35579	Soybean	nucleus	57.49	57.71
KRH35356	Soybean	nucleus	51.6	52.68
KRG91457	Soybean	nucleus	51.98	52.25
KRH48236	Soybean	nucleus	55.31	52.11
KRH40539	Soybean	nucleus	54.42	51.83
KRH00641	Soybean	nucleus	54.16	51.46
KRH65144	Soybean	nucleus	55.06	51.44
KRH38939	Soybean	nucleus	46.61	50.42
KRH09477	Soybean	nucleus	46.22	50.28
KRH60596	Soybean	nucleus	45.33	49.65
KRH41898	Soybean	nucleus	45.71	49.51
KRH38560	Soybean	nucleus	47.25	47.55
Os08t0187500-01	Rice	nucleus	19.85	47.55
KRH09109	Soybean	plastid	46.99	47.35
KRH44348	Soybean	nucleus	42.51	44.38
KRH47277	Soybean	nucleus	42.0	43.68
KRH74360	Soybean	nucleus	43.53	43.09
KRH09884	Soybean	plastid	41.36	43.01
KRH23432	Soybean	plastid	41.87	42.91
KRH39579	Soybean	nucleus	43.02	42.0
KRH22254	Soybean	cytosol	27.4	40.0
KRH11810	Soybean	nucleus	34.96	38.29
KRH36827	Soybean	nucleus	34.19	37.66
KRH27078	Soybean	extracellular, golgi, peroxisome	15.36	36.36
KRH36826	Soybean	nucleus	32.91	36.04
KRH42428	Soybean	nucleus	32.14	33.16
KRH42429	Soybean	cytosol	26.63	28.49

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100809556	MapMan:15.5.3.3	UniProt:A0A0K2CTA4	EMBL:ACUP02008421	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G308200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1M436	InterPro:IPR001356	InterPro:IPR002913	ProteinID:KRH22553.1
EnsemblPlants:KRH22554	ProteinID:KRH22554	ProteinID:KRH22554.1	EMBL:KT031170	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000233BF31	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:40389177..40396354

Molecular Weight (calculated)

84646.8 Da

IEP (calculated)

5.835

GRAVY (calculated)

-0.279

Length

781 amino acids

Sequence
(BLAST)

001: MPAGIMIPAR NMPSMIGRNG TVGGFGLSSG LSLGQIENHK ASESQRSEEM FQPNLMEAGQ LHPLDMPQNT SESDVPRIRE DDFDSATKSG SENLEGASGE
101: DQDPRPNKKK RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH ENTQLRTENE KLRADNMRFR EALGNASCPN
201: CGGPTAIGEM SFDEHHLRLE NARLREEIDR ISAIAAKYVG KPVVSYPLVS PSSIPPRPLE LGIGGGFGGQ PGGTGGDMYG GAAGDLLRSI SGPTEADKPI
301: IIELAVAAME ELIGMAQMGE PLWLTTLDGT TVLNEDEYIR SFPRGIGPKP AGFKFEASRE TAVVIMNHVN LVEILMDVNQ WSTVFAGIVS RAMTLEVLST
401: GVAGNYNGAL QVMTAEVQVP SPLVPTRESY FVRYCKQHGD GTWAVVDVSL DNLRPSPSAR CRRRPSGCLI QEMPNGYSKV IWVEHVEVDD RGVHNLYKQL
501: VSSGHAFGAK RWVATLDRQC ERLASAMATN IPTVDVGVIT NQDGRKSMLK LAERMVISFC AGVSASTAHT WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV
601: LSAATSFWLP VSPKRVFEFL RDENSRSEWD ILSNGGVVQE MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESCADST GSFVIYAPVD IVAMNVVLNG
701: GDPDYVALLP SGFAILPDGT TAHGGGIGDT GHGGSLLTVA FQILVDSVPT AKLSLGSVAT VNNLIACTVE RIKAALSGEV A

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.