CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91457
KRH09109
KRH35356
KRH38560

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25530.1	KRG91457	AT4G25530.1	17189287
AT4G25530.1	KRH09109	AT4G25530.1	17189287
AT4G25530.1	KRH35356	AT4G25530.1	17189287
AT4G25530.1	KRH38560	AT4G25530.1	17189287

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38560	Soybean	nucleus	91.1	90.98
KRH35356	Soybean	nucleus	69.16	70.07
KRG91457	Soybean	nucleus	69.68	69.5
KRH40539	Soybean	nucleus	58.71	55.49
KRH00641	Soybean	nucleus	58.45	55.11
KRH13175	Soybean	cytosol	12.26	53.67
KRH48236	Soybean	nucleus	56.52	52.83
KRH65144	Soybean	nucleus	56.39	52.27
VIT_16s0100g00670.t01	Wine grape	nucleus	51.74	51.21
AT5G52170.2	Thale cress	nucleus	45.29	51.09
CDY31916	Canola	nucleus	44.0	50.67
CDY00515	Canola	nucleus	43.74	50.37
Bra028295.1-P	Field mustard	nucleus	43.87	49.85
KRH56105	Soybean	nucleus	46.58	49.52
KRH25398	Soybean	plastid	46.58	47.44
KRH22554	Soybean	nucleus	47.35	46.99
KRH77881	Soybean	nucleus	44.26	46.92
KRH26803	Soybean	nucleus	47.1	46.73
KRH27601	Soybean	nucleus	44.13	46.72
PGSC0003DMT400037055	Potato	nucleus	48.39	46.18
Solyc03g026070.2.1	Tomato	nucleus	47.61	45.72
PGSC0003DMT400092271	Potato	nucleus	14.58	42.64
PGSC0003DMT400042908	Potato	nucleus	27.35	42.57
KRH38939	Soybean	nucleus	39.48	42.38
KRH09477	Soybean	nucleus	39.23	42.34
KRG91238	Soybean	nucleus	39.74	42.13
PGSC0003DMT400028195	Potato	nucleus	20.52	41.73
KRH60596	Soybean	nucleus	38.32	41.66
PGSC0003DMT400080861	Potato	nucleus	24.39	41.18
PGSC0003DMT400028197	Potato	cytosol	17.68	41.14
KRH41898	Soybean	nucleus	38.06	40.92
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	16.0	40.79
PGSC0003DMT400076898	Potato	cytosol	25.94	40.61
PGSC0003DMT400062468	Potato	cytosol	18.58	40.34
KRH35579	Soybean	nucleus	40.13	39.97
KRH44348	Soybean	nucleus	38.58	39.97
KRH47277	Soybean	nucleus	38.71	39.95
Solyc06g035940.2.1	Tomato	nucleus	34.84	39.94
CDX89415	Canola	cytosol, mitochondrion	9.16	39.89
KRH23432	Soybean	plastid	38.97	39.63
KRH09884	Soybean	plastid	38.19	39.41
Solyc06g050160.2.1	Tomato	nucleus	32.9	39.05
PGSC0003DMT400086035	Potato	nucleus	33.03	38.97
KRH74360	Soybean	nucleus	39.35	38.66
AT4G25530.1	Thale cress	nucleus	34.06	38.48
PGSC0003DMT400076902	Potato	nucleus	32.9	38.06
KRH39579	Soybean	nucleus	39.23	38.0
CDY39874	Canola	plasma membrane	9.03	36.46
KRH11810	Soybean	nucleus	33.03	35.9
KRH36827	Soybean	nucleus	32.65	35.68
Bra013898.1-P	Field mustard	nucleus	26.84	33.39
KRH36826	Soybean	nucleus	30.71	33.38
CDX89416	Canola	nucleus	27.61	32.97
CDX94443	Canola	cytosol	26.32	32.48
KRH22254	Soybean	cytosol	20.65	29.91
KRH42428	Soybean	nucleus	28.39	29.06
KRH27078	Soybean	extracellular, golgi, peroxisome	12.0	28.18
KRH42429	Soybean	cytosol	23.74	25.21

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100784656	MapMan:15.5.3.3	EMBL:ACUP02010271	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G196700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:K7MIK7	EnsemblPlants:KRH09109	ProteinID:KRH09109
ProteinID:KRH09109.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF520	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI000295408E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:35814201..35819307

Molecular Weight (calculated)

84758.3 Da

IEP (calculated)

5.883

GRAVY (calculated)

-0.314

Length

775 amino acids

Sequence
(BLAST)

001: MASFFTVEPP LFSSPFNISK QNPSTLNLSV QRRMEGHSEM GLMGESFDTS NLLGRMRDDE YESRSGSDNF DGGSGDDQDA GDDQPHKKKK KYHRHTPQQI
101: QELEAFFKEC PHPDEKQRTD LSKRLGLENK QVKFWFQNRR TQMKTQLERH ENMILRQEND KLRAENSVMK DALANPICNN CGGPAIPGQI SLEEHQTRME
201: NARLKDELNR ICALANKFLG RPLSPLASPM ALPPSNSGLE LAIGRNGLGG SSNFGMPLPM GFDVGDGALG SSPAMSTMGA RSPMGMMGNE IQLERSMLLD
301: LALSAMNELI KMAQPDTSLW IKSSDGRNEV LNHDEYARLF SPYIGSKPAA GYVTEATRGT GVVSASSLGL VEILMDADQW SEMFSSMIAS AATVEVLSSG
401: TGGTRSGALQ VMLAEVQLLS PLVPARQVSF LRFCKKHAEG LWAVVDVSVD IGRNVTNSHP LMSCRRLPSG CVIQDMPNGF SNITWVEHSQ YDESVIHQLY
501: RPLVSSGIGF GAQRWIATLL RQCDCLAILR SPQGPSEDPT AQAGRTNMMK LAQRMTECFC SGICASSACK WDILHIGNLA DDMRIMARKI DDPTEAPGIV
601: LSASTSVWMP VSRKRVFDFL RDENLRGEWD LLSKDGPMKE MLHIAKGQDR GNCVSILHSA NSECNVLYLQ ESWSDASGSM VVYSPINMQA LQMVMSCGDS
701: SFVPLRPSGF AILPDGTSNN GDGSDGGGSC LLTVGLQMLP NGNHQSAKFT MESVDAVNNL ISFTIQKVKD ALGVA

Best Arabidopsis Sequence Match ( AT1G05230.3 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RSANSSQSNM LILQESCTDP TASFVIYAPV DIVAMNIVLN GGDPDYVALL PSGFAILPDG NANSGAPGGD GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN
701: NLIACTVERI KASMSCETA

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.