CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91457
KRH09109
KRH35356
KRH38560

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25530.1	KRG91457	AT4G25530.1	17189287
AT4G25530.1	KRH09109	AT4G25530.1	17189287
AT4G25530.1	KRH35356	AT4G25530.1	17189287
AT4G25530.1	KRH38560	AT4G25530.1	17189287

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35356	Soybean	nucleus	95.75	97.25
KRH09109	Soybean	plastid	69.5	69.68
KRH38560	Soybean	nucleus	68.73	68.81
KRH40539	Soybean	nucleus	66.67	63.17
KRH00641	Soybean	nucleus	66.67	63.02
KRH48236	Soybean	nucleus	65.77	61.64
KRH65144	Soybean	nucleus	64.61	60.05
VIT_16s0100g00670.t01	Wine grape	nucleus	59.46	59.0
AT5G52170.2	Thale cress	nucleus	51.35	58.08
KRH13175	Soybean	cytosol	12.74	55.93
CDY31916	Canola	nucleus	48.39	55.87
CDY00515	Canola	nucleus	48.13	55.57
Bra028295.1-P	Field mustard	nucleus	48.26	54.99
KRH56105	Soybean	nucleus	50.97	54.32
KRH25398	Soybean	plastid	51.22	52.3
KRH22554	Soybean	nucleus	52.25	51.98
KRH27601	Soybean	nucleus	48.91	51.91
KRH26803	Soybean	nucleus	51.87	51.6
KRH77881	Soybean	nucleus	48.39	51.44
PGSC0003DMT400037055	Potato	nucleus	52.38	50.12
Solyc03g026070.2.1	Tomato	nucleus	50.58	48.7
KRG91238	Soybean	nucleus	44.02	46.79
KRH38939	Soybean	nucleus	43.11	46.4
KRH09477	Soybean	nucleus	42.6	46.1
CDX89415	Canola	cytosol, mitochondrion	10.55	46.07
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	17.76	45.39
KRH60596	Soybean	nucleus	41.31	45.02
KRH41898	Soybean	nucleus	41.7	44.94
KRH35579	Soybean	nucleus	44.66	44.6
PGSC0003DMT400076898	Potato	cytosol	28.31	44.44
Solyc06g035940.2.1	Tomato	nucleus	38.22	43.93
PGSC0003DMT400042908	Potato	nucleus	28.06	43.78
PGSC0003DMT400028197	Potato	cytosol	18.4	42.94
Solyc06g050160.2.1	Tomato	nucleus	36.04	42.88
PGSC0003DMT400062468	Potato	cytosol	19.56	42.58
KRH44348	Soybean	nucleus	40.93	42.51
KRH47277	Soybean	nucleus	40.93	42.34
PGSC0003DMT400076902	Potato	nucleus	36.42	42.24
PGSC0003DMT400086035	Potato	nucleus	35.52	42.01
KRH23432	Soybean	plastid	41.18	41.99
KRH09884	Soybean	plastid	40.54	41.94
PGSC0003DMT400080861	Potato	nucleus	24.71	41.83
PGSC0003DMT400092271	Potato	nucleus	14.16	41.51
PGSC0003DMT400028195	Potato	nucleus	19.95	40.68
AT4G25530.1	Thale cress	nucleus	35.78	40.52
KRH74360	Soybean	nucleus	40.41	39.8
KRH39579	Soybean	nucleus	40.54	39.38
CDY39874	Canola	plasma membrane	9.65	39.06
KRH36827	Soybean	nucleus	33.98	37.24
KRH11810	Soybean	nucleus	33.59	36.61
CDX89416	Canola	nucleus	29.47	35.29
Bra013898.1-P	Field mustard	nucleus	28.19	35.15
CDX94443	Canola	cytosol	27.28	33.76
KRH22254	Soybean	cytosol	22.27	32.34
KRH36826	Soybean	nucleus	29.6	32.26
KRH42428	Soybean	nucleus	29.47	30.25
KRH27078	Soybean	extracellular, golgi, peroxisome	12.1	28.48
KRH42429	Soybean	cytosol	23.94	25.48

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100785102	MapMan:15.5.3.3	EMBL:ACUP02012688	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G156500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	UniProt:I1NGR2	InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:KRG91457	ProteinID:KRG91457
ProteinID:KRG91457.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF520	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI0002953DA5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:39527240..39533643

Molecular Weight (calculated)

85124.0 Da

IEP (calculated)

6.151

GRAVY (calculated)

-0.247

Length

777 amino acids

Sequence
(BLAST)

001: MIFISQSIPS SMLNSSSFSY STQRKMEGPS EIGLIGENFD AGLMGRMRDD EYESRSGSDN FEGASGDDQD GGDDQPQRKK RYHRHTPHQI QELEAFFKEC
101: PHPDEKQRLD LSKRLGLENK QVKFWFQNRR TQMKTQLERH ENIMLRQEND KLRAENSLIK EAMSNPVCNN CGGPAIPGQI SFEEHQIRIE NARLKDELNR
201: ICVLANKFLG KPISSLTSPM ALTTSNSGLE LGIGRNGIGG SSTLGTPLPM GLDLGDGVLG TQPAMPGVRS ALGLMGNEVQ LERSMLIDLA LAAMEELLKM
301: TQAESPLWIK SLDGEKEIFN HEEYARLFSP CIGPKPAGYV TEATRETGIV IINSLALVET LMDANRWAEM FPSMIARAIN LDVISNGMGG TRNGALQVMH
401: AEVQLLSPLV PVRQVRFIRF CKQHAEGVWA VVDVSIEIGH DAANAQPSIS CRRLPSGCIV QDMPNGYSKV TWLEHWEYDE NVVHQLYRPL LSSGVGFGAH
501: RWIATLQRQC ECLAILMSSS ISSDSHTALS QAGRRSMLKL AQRMTSNFCS GVCASSARKW DSLHIGTLGD DMKVMTRKNV DDPGEPPGIV LSAATSVWMP
601: VSRQRLFDFL RDERLRSEWD ILSNGGPMQE MVHIAKGQGH GNCVSLLRAN AVNANDSSML ILQETWMDAS CSVVVYAPVD VQSLNVVMSG GDSAYVALLP
701: SGFAILPDGH CNDNGCNGSL QKGRGSDDGS GGSLLTVGFQ ILVNSLPTAK LTVESVDTVN NLISCTIQKI KAALRVA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.