Factsheet for PGSC0003DMT400042908

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028197	Potato	cytosol	61.65	92.19
PGSC0003DMT400080861	Potato	nucleus	84.14	91.29
PGSC0003DMT400092271	Potato	nucleus	47.59	89.43
PGSC0003DMT400028195	Potato	nucleus	62.65	81.89
PGSC0003DMT400062468	Potato	cytosol	54.82	76.47
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	42.77	70.07
Solyc06g050160.2.1	Tomato	nucleus	69.08	52.68
PGSC0003DMT400095083	Potato	cytosol	12.25	50.41
PGSC0003DMT400095329	Potato	cytosol	26.91	48.55
PGSC0003DMT400086035	Potato	nucleus	53.61	40.64
PGSC0003DMT400076898	Potato	cytosol	37.35	37.58
PGSC0003DMT400076902	Potato	nucleus	45.98	34.18
CDY39874	Canola	plasma membrane	11.24	29.17
KRH35356	Soybean	nucleus	43.57	28.37
PGSC0003DMT400071377	Potato	nucleus	46.59	28.26
KRG91457	Soybean	nucleus	43.78	28.06
PGSC0003DMT400037055	Potato	nucleus	45.38	27.83
Bra028295.1-P	Field mustard	nucleus	37.95	27.71
CDY31916	Canola	nucleus	37.35	27.64
PGSC0003DMT400019986	Potato	nucleus	44.78	27.56
KRH09109	Soybean	plastid	42.57	27.35
CDY00515	Canola	nucleus	36.95	27.34
KRH38560	Soybean	nucleus	41.37	26.55
PGSC0003DMT400029291	Potato	nucleus	36.55	26.11
PGSC0003DMT400061859	Potato	nucleus	35.74	25.83
PGSC0003DMT400005277	Potato	nucleus	37.95	25.78
PGSC0003DMT400069312	Potato	nucleus	36.14	25.17
PGSC0003DMT400094124	Potato	nucleus	34.34	22.62
PGSC0003DMT400048971	Potato	nucleus	25.5	22.36
PGSC0003DMT400006770	Potato	nucleus	33.73	21.76
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.26	21.59
PGSC0003DMT400006155	Potato	nucleus	31.93	20.81
VIT_13s0067g01580.t01	Wine grape	nucleus	4.62	20.54
Bra013898.1-P	Field mustard	nucleus	25.3	20.22
CDX94443	Canola	cytosol	25.5	20.22
CDX89415	Canola	cytosol, mitochondrion	7.03	19.66
CDX89416	Canola	nucleus	25.5	19.57
PGSC0003DMT400085057	Potato	cytosol	18.67	19.46
PGSC0003DMT400051268	Potato	cytosol	18.88	18.84
PGSC0003DMT400034503	Potato	cytosol, nucleus	25.5	18.65
PGSC0003DMT400037397	Potato	cytosol	16.67	16.9
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	14.66	15.84
PGSC0003DMT400036411	Potato	nucleus	16.67	15.81
AT5G07260.1	Thale cress	cytosol	17.07	15.71
PGSC0003DMT400038820	Potato	extracellular	11.04	15.11
PGSC0003DMT400051266	Potato	cytosol	9.24	11.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:M1BDS4	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400016639	PGSC:PGSC0003DMG400016639	EnsemblPlants:PGSC0003DMT400042908
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00029661E3	SEG:seg

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016639]

Coordinates

chr6:+:34034929..34039062

Molecular Weight (calculated)

55733.6 Da

IEP (calculated)

5.406

GRAVY (calculated)

-0.355

Length

498 amino acids

Sequence
(BLAST)

001: MEGHSDMNER RESLINVVIG GSGEEEIERS SIGDNIIGGA SVDERCESSS KRKKPIRHNS DQIQALGSFF KKNSLPNKKV QLELATKLSM DINQVQNWFQ
101: NKRTQMKSQL KLYENKTLKQ ENDKFRIEHI VMKEALENSI RYNCKEKIDE NQRKIEHDQL EDEVKRLTAQ AYKLSLFNKD VVHDKMVLLN LAMDALNELF
201: RLYENDKPLW VSSLDGGGET LNIEEYARLF TPLIGTKPEH FTTEATKASG IVADTSLALV NTLMDKRQWV EMFPCIVGKT YTTDVISTGI GGNKSGSLLL
301: IKTELQIISD LVYVREVQFL RFCKKHAEGV WAIVDVSVDT IQEGSQQSEI ENCRRLPSGC ILQDMPNGYC QGDDSGANRV ILQDTCMDAT GSLLVYATID
401: SQEINTVMKG GDSSCVTLFS NGITIVPDYF QDFSTTNNYN VISGEMNNGF GGGSLVTISF QMVGNIFPAT TLSMELVKEA NALISHTIHK IKSALKCK

Best Arabidopsis Sequence Match ( AT1G05230.12 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNVSYTGF

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.