Factsheet for PGSC0003DMT400048971

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041850.1.1	Tomato	nucleus	85.39	71.32
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.05	46.88
PGSC0003DMT400061859	Potato	nucleus	55.28	45.57
PGSC0003DMT400029291	Potato	nucleus	53.35	43.47
PGSC0003DMT400005277	Potato	nucleus	53.87	41.75
PGSC0003DMT400094124	Potato	nucleus	53.17	39.95
CDY30748	Canola	endoplasmic reticulum	38.03	36.8
CDY48272	Canola	nucleus	44.37	35.8
CDY12213	Canola	nucleus	44.72	35.67
Bra005588.1-P	Field mustard	nucleus	44.01	35.51
PGSC0003DMT400076898	Potato	cytosol	30.28	34.75
CDY19129	Canola	nucleus	43.13	33.7
Bra021779.1-P	Field mustard	nucleus	43.13	33.65
CDY15339	Canola	nucleus	42.78	33.24
AT2G32370.1	Thale cress	nucleus	41.37	32.41
PGSC0003DMT400069312	Potato	nucleus	40.67	32.31
PGSC0003DMT400037397	Potato	cytosol	27.46	31.77
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	16.73	31.25
PGSC0003DMT400071377	Potato	nucleus	44.89	31.06
PGSC0003DMT400006155	Potato	nucleus	41.2	30.63
PGSC0003DMT400019986	Potato	nucleus	43.31	30.41
PGSC0003DMT400086035	Potato	nucleus	34.51	29.83
PGSC0003DMT400006770	Potato	nucleus	39.96	29.4
PGSC0003DMT400051268	Potato	cytosol	25.7	29.26
PGSC0003DMT400062468	Potato	cytosol	18.31	29.13
PGSC0003DMT400085057	Potato	cytosol	24.47	29.08
PGSC0003DMT400038820	Potato	extracellular	18.31	28.57
PGSC0003DMT400037055	Potato	nucleus	39.26	27.46
PGSC0003DMT400028197	Potato	cytosol	16.02	27.33
PGSC0003DMT400095083	Potato	cytosol	5.63	26.45
PGSC0003DMT400034503	Potato	cytosol, nucleus	31.34	26.14
PGSC0003DMT400095329	Potato	cytosol	12.5	25.72
PGSC0003DMT400042908	Potato	nucleus	22.36	25.5
PGSC0003DMT400076902	Potato	nucleus	29.93	25.37
PGSC0003DMT400036411	Potato	nucleus	22.71	24.57
PGSC0003DMT400051266	Potato	cytosol	16.37	23.91
PGSC0003DMT400080861	Potato	nucleus	19.19	23.75
PGSC0003DMT400028195	Potato	nucleus	14.44	21.52
PGSC0003DMT400092271	Potato	nucleus	9.15	19.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	UniProt:M1BN38	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400019030
PGSC:PGSC0003DMG400019030	EnsemblPlants:PGSC0003DMT400048971	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF513	SMART:SM00234	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000296BFDF	:	:	:	:	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019030]

Coordinates

chr7:-:38764987..38768491

Molecular Weight (calculated)

63909.4 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.232

Length

568 amino acids

Sequence
(BLAST)

001: MKELSNKLEL EPLQIKFWFQ NRRTQIKNQD QHSENLSLRA ENDKLRAECV WLSEAINNGC PNCGDHGFRL GETPNNEQYL RLENARLQEE VVHISRQYIA
101: KVIRAAMYEL LQMAQMGEPL WLPNIDGVNN DLNEEEYKRK FPRGNEPKPN GIKTTASRES VLVTMNHINL VEIFMDTNHW ARFFSSIVLT ARTMDVLDGS
201: TKMIYAEFQV PSPQIPNRDC YFVRSCNKIV DGLWVIVDVS LDHTPITRCW KRPSGCVIKQ ISNDISKVTW VEHIEADDTL VHTFYKTFVN SSLAFGAKRW
301: ISILDRQCGR LASAEATNLP QSNIIHTLST GRKSALKLGE RMIIDYISGV SGTTTHQWTT FTRSGYNTND VQVMTRQSIN DPGRPRGLVL CASTSIWLPV
401: LPKLVFDFLG NENTRGKWDI LSNVGTIQQV THIANGTEIG NSISILRVNS PNPAQNDMLI FQESITDPTG SFIVYAPIDI RAIDMVLCGG NPDGVPLLPS
501: GFAIFPDGPS SSTNYEISDY SGSFLTISFQ ILVHNVPTAN ISPQSIASVN KLMFCTIDKI KNALFLNF

Best Arabidopsis Sequence Match ( AT1G05230.4 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.