Factsheet for Solyc07g041850.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048971	Potato	nucleus	71.32	85.39
Solyc03g031760.2.1	Tomato	cytosol	41.32	44.67
Solyc10g005330.2.1	Tomato	nucleus	46.18	44.1
Solyc02g080260.2.1	Tomato	nucleus	46.18	41.81
Solyc12g005830.1.1	Tomato	nucleus	44.41	40.21
CDY48272	Canola	nucleus	38.82	37.5
Bra005588.1-P	Field mustard	nucleus	38.53	37.22
CDY12213	Canola	nucleus	38.38	36.66
CDY30748	Canola	endoplasmic reticulum	30.74	35.6
CDY19129	Canola	nucleus	37.35	34.94
Bra021779.1-P	Field mustard	nucleus	37.35	34.89
Solyc03g098200.2.1	Tomato	nucleus	36.91	34.81
CDY15339	Canola	nucleus	37.06	34.47
Solyc01g091630.2.1	Tomato	nucleus	41.18	34.1
Solyc06g072310.2.1	Tomato	nucleus	35.59	33.75
AT2G32370.1	Thale cress	nucleus	35.88	33.66
Solyc09g066070.2.1	Tomato	cytosol	20.59	32.48
Solyc03g120620.2.1	Tomato	nucleus	36.62	32.13
Solyc06g035940.2.1	Tomato	nucleus	30.74	30.92
Solyc10g006420.2.1	Tomato	cytosol	23.68	30.55
Solyc03g026070.2.1	Tomato	nucleus	35.74	30.11
Solyc09g057540.2.1	Tomato	cytosol	21.91	29.98
Solyc08g076370.2.1	Tomato	nucleus	37.06	29.93
Solyc04g025740.1.1	Tomato	nucleus	6.47	29.73
Solyc06g050160.2.1	Tomato	nucleus	28.38	29.56
Solyc09g057530.1.1	Tomato	cytosol	5.88	29.2
Solyc09g060140.2.1	Tomato	mitochondrion	15.74	29.08
Solyc09g060170.1.1	Tomato	cytosol	14.71	29.07
Solyc09g060130.1.1	Tomato	cytosol	18.68	28.6
Solyc04g025490.1.1	Tomato	cytosol	10.15	28.51
Solyc11g022410.1.1	Tomato	extracellular	3.09	28.38
Solyc10g018030.1.1	Tomato	cytosol	17.21	28.33
Solyc10g018020.1.1	Tomato	extracellular	13.82	27.98
Solyc11g022430.1.1	Tomato	cytosol	7.35	27.93
Solyc07g026570.1.1	Tomato	nucleus	5.74	27.66
Solyc07g026560.1.1	Tomato	cytosol	19.12	27.48
Solyc11g022420.1.1	Tomato	cytosol	18.97	26.93
Solyc11g011940.1.1	Tomato	nucleus	28.24	26.78
Solyc08g062510.2.1	Tomato	nucleus	25.29	26.34
Solyc09g066030.1.1	Tomato	nucleus	27.94	26.28
Solyc09g066050.2.1	Tomato	cytosol	21.32	26.22
Solyc07g037910.1.1	Tomato	cytosol	7.94	25.59
Solyc08g062520.2.1	Tomato	cytosol	18.68	24.85
Solyc04g025480.1.1	Tomato	cytosol	23.82	24.73
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	25.0	24.32
Solyc05g015030.1.1	Tomato	cytosol	16.03	23.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:K4CE51
PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
EnsemblPlantsGene:Solyc07g041850.1	EnsemblPlants:Solyc07g041850.1.1	UniParc:UPI000276BBFF	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:54233306..54237729

Molecular Weight (calculated)

77002.0 Da

IEP (calculated)

6.996

GRAVY (calculated)

-0.396

Length

680 amino acids

Sequence
(BLAST)

001: MDSIMNSANK NSSMIENVPS SSRLPFGQSS SMSKSKPNPI SIESETISIK EIMQLRTDDE VNSKSEYNDN NVDEQDGKGD EHTNKKMCNR RHTKQQIAEM
101: EALFKECPKP DKKKIKELSD KIELEPLQIV FWFQNRRTQL KNQDQHSKNL SLRDEYDKLR TEYAWLSEVV NNGCPNCSDH GFHLGEIPDN EQHLSLKNAR
201: QEEEVVHISR QHIAEVIRAA MYELLQMSQM GEPLWLPNND LNIEEYKRKF PRSNDPKPNG IKTSASRESS LVTMNHINLV KIFMDTNHWT IFFSSIVLTA
301: REMDVLDGST KMIYAEFQVP SPQIPNRHCY FVRSCNKIVD GLWVIVDVSL DHTPITRCWK RPSGCVIQQI SNDISKVTWI EHIEAHDTLI YTFYKTFVNS
401: SLAFGAKRWI SILDRQCERL ASVEATNLPQ NNITHTLSID KERRKSVLKL GERMIINYIS GVSGTKTHKW TTFTGSGYNI NDLQVKTRRS INDPGRPRGL
501: VLCASTSIWL PVLPKLLFDF LRNENTRGKW DILINGGTIQ EVTHIANGME IGNSISILRV NCPNQAPNGM LIIQESISDP TGSFIVYAPI DIRAIDMILC
601: GGNPDVVPLL PSGFAILPDG PSGSTNHEIS DYSGSFLTIA FQILVDNVPT ANISPQSVAA VDKLMFCTIN KIKNALFLNF

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.