Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g026570.1.1 | Tomato | nucleus | 41.89 | 43.97 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 35.14 | 34.9 |
| HORVU7Hr1G035250.1 | Barley | nucleus | 34.46 | 34.23 |
| Solyc11g011940.1.1 | Tomato | nucleus | 45.95 | 9.48 |
| Solyc09g066030.1.1 | Tomato | nucleus | 43.92 | 8.99 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 39.86 | 8.44 |
| Solyc03g098200.2.1 | Tomato | nucleus | 37.84 | 7.77 |
| Solyc06g072310.2.1 | Tomato | nucleus | 37.16 | 7.67 |
| Solyc02g080260.2.1 | Tomato | nucleus | 36.49 | 7.19 |
| Solyc10g005330.2.1 | Tomato | nucleus | 34.46 | 7.16 |
| Solyc03g026070.2.1 | Tomato | nucleus | 38.51 | 7.06 |
| Solyc01g091630.2.1 | Tomato | nucleus | 37.84 | 6.82 |
| Solyc06g050160.2.1 | Tomato | nucleus | 29.73 | 6.74 |
| Solyc12g005830.1.1 | Tomato | nucleus | 33.78 | 6.66 |
| Solyc06g035940.2.1 | Tomato | nucleus | 29.73 | 6.51 |
| Solyc07g041850.1.1 | Tomato | nucleus | 29.73 | 6.47 |
| Solyc08g076370.2.1 | Tomato | nucleus | 35.81 | 6.29 |
| Solyc03g120620.2.1 | Tomato | nucleus | 32.43 | 6.19 |
| Solyc05g015030.1.1 | Tomato | cytosol | 18.92 | 5.91 |
| Solyc09g057540.2.1 | Tomato | cytosol | 16.22 | 4.83 |
| Solyc08g062510.2.1 | Tomato | nucleus | 20.27 | 4.59 |
| Solyc03g031760.2.1 | Tomato | cytosol | 18.24 | 4.29 |
| Solyc09g066050.2.1 | Tomato | cytosol | 11.49 | 3.07 |
| Solyc04g025480.1.1 | Tomato | cytosol | 12.84 | 2.9 |
| Solyc10g018030.1.1 | Tomato | cytosol | 2.7 | 0.97 |
| Solyc07g037910.1.1 | Tomato | cytosol | 1.35 | 0.95 |
| Solyc11g022420.1.1 | Tomato | cytosol | 2.7 | 0.84 |
| Solyc10g006420.2.1 | Tomato | cytosol | 2.7 | 0.76 |
| Solyc09g057530.1.1 | Tomato | cytosol | 0.68 | 0.73 |
| Solyc09g060130.1.1 | Tomato | cytosol | 2.03 | 0.68 |
| Solyc11g022430.1.1 | Tomato | cytosol | 0.68 | 0.56 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 1.35 | 0.54 |
| Solyc07g026560.1.1 | Tomato | cytosol | 1.35 | 0.42 |
| Solyc04g025490.1.1 | Tomato | cytosol | 0.68 | 0.41 |
| Solyc08g062520.2.1 | Tomato | cytosol | 1.35 | 0.39 |
| Solyc09g060170.1.1 | Tomato | cytosol | 0.68 | 0.29 |
| Solyc09g066070.2.1 | Tomato | cytosol | 0.68 | 0.23 |
| Solyc10g018020.1.1 | Tomato | extracellular | 0.0 | 0.0 |
| Solyc11g022410.1.1 | Tomato | extracellular | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:K4BR18 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF496 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc04g025740.1 | EnsemblPlants:Solyc04g025740.1.1 | UniParc:UPI0002765C32 |
Description
No Description!
Coordinates
chr4:+:21242951..21245853
Molecular Weight (calculated)
17232.9 Da
IEP (calculated)
10.365
GRAVY (calculated)
-1.032
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNVGKKHVG ESSTSQNKAN KKKKRFRLTV EQIQQVKDFL KKCPHPDKDQ LIQISEEVGL KPKKIKNWIY NNKTQEKIQV EKSANKTLRT ENEKLRSENM
101: AMKEAMKKII CPQCDSERAS NLENLKAENQ RLTDKILWYS ILLGGENF
101: AMKEAMKKII CPQCDSERAS NLENLKAENQ RLTDKILWYS ILLGGENF
001: MDNNGGGSSG NEQYTSGDAK QNGKRTCHRH TPQQIQRLEA YFKECPHPDE RQRNQLCREL KLEPDQIKFW FQNKRTQSKT QEDRSTNVLL RGENETLQSD
101: NEAMLDALKS VLCPACGGPP FGREERGHNL QKLRFENARL KDHRDRISNF VDQHKPNEPT VEDSLAYVPS LDRISYGING GNMYEPSSSY GPPNFQIIQP
201: RPLAETDMSL LSEIAASAVE ELKRLFLAEE QFWVKSCIDE TYVIDTESYE RFSHAVKHFS STTAHVESSK AVTVVHVEAI NLIQMFLDPE KWKELFPTIV
301: NKANTIHVLG SGLPIRGNCN VLQVMWEQLH ILSPLVPARE FMVVRCCQEI EKGIWIIADV SHRANFDFGN AACYKRPSGC LIQALPDAHS KVMWIEHVEV
401: DHKLDTHKIY RDLLSGGSGY GAKRWIVTLE RMCERMALSS IQTLPPSDRS EVITTGEARR SVMKLGERMV KNFNEMLTMS GKIDFPQQSK NGVRVSIRMN
501: IEAGQPPGIV VSASSSLAIP LTPLQVFAFL QNLDTRQQVL S
101: NEAMLDALKS VLCPACGGPP FGREERGHNL QKLRFENARL KDHRDRISNF VDQHKPNEPT VEDSLAYVPS LDRISYGING GNMYEPSSSY GPPNFQIIQP
201: RPLAETDMSL LSEIAASAVE ELKRLFLAEE QFWVKSCIDE TYVIDTESYE RFSHAVKHFS STTAHVESSK AVTVVHVEAI NLIQMFLDPE KWKELFPTIV
301: NKANTIHVLG SGLPIRGNCN VLQVMWEQLH ILSPLVPARE FMVVRCCQEI EKGIWIIADV SHRANFDFGN AACYKRPSGC LIQALPDAHS KVMWIEHVEV
401: DHKLDTHKIY RDLLSGGSGY GAKRWIVTLE RMCERMALSS IQTLPPSDRS EVITTGEARR SVMKLGERMV KNFNEMLTMS GKIDFPQQSK NGVRVSIRMN
501: IEAGQPPGIV VSASSSLAIP LTPLQVFAFL QNLDTRQQVL S
Arabidopsis Description
HDG8Homeobox-leucine zipper protein HDG8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.