Factsheet for Solyc08g076370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g098200.2.1
Solyc06g072310.2.1
Solyc10g083190.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	Solyc03g098200.2.1	AT1G73360.1	21798944
AT4G17710.1	Solyc06g072310.2.1	AT1G73360.1	21798944
AT4G17710.1	Solyc10g083190.1.1	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006155	Potato	nucleus	89.07	98.17
VIT_02s0012g02030.t01	Wine grape	nucleus	71.14	75.06
KRH74360	Soybean	nucleus	65.2	69.58
KRH39579	Soybean	nucleus	65.68	69.12
GSMUA_Achr5P14100_001	Banana	nucleus	55.82	62.17
GSMUA_Achr4P19010_001	Banana	nucleus	56.89	59.8
AT5G46880.3	Thale cress	nucleus	56.29	57.38
CDY43458	Canola	nucleus	54.28	56.28
Bra017519.1-P	Field mustard	nucleus	54.28	56.0
CDY03177	Canola	nucleus	54.28	55.33
Bra024984.1-P	Field mustard	nucleus	52.14	55.22
CDY33492	Canola	nucleus	51.9	54.9
CDX77711	Canola	nucleus	53.44	54.68
AT4G17710.1	Thale cress	nucleus	45.13	53.6
Os10t0575600-01	Rice	nucleus	55.94	53.4
TraesCS1D01G197300.1	Wheat	nucleus	55.94	53.34
TraesCS1A01G193400.1	Wheat	nucleus, plastid	54.87	52.92
HORVU1Hr1G050620.2	Barley	nucleus	55.46	52.77
TraesCS1B01G208400.1	Wheat	nucleus	55.58	52.58
CDY08866	Canola	nucleus	45.72	52.31
KXG38837	Sorghum	nucleus	54.63	52.15
Bra021035.1-P	Field mustard	nucleus	44.77	51.36
CDX76559	Canola	nucleus	44.77	51.36
Zm00001d030069_P004	Maize	nucleus	53.8	51.24
Solyc03g098200.2.1	Tomato	nucleus	40.74	47.57
Solyc06g072310.2.1	Tomato	nucleus	39.91	46.86
Solyc10g005330.2.1	Tomato	nucleus	38.0	44.94
Solyc03g031760.2.1	Tomato	cytosol	33.49	44.83
Solyc02g080260.2.1	Tomato	nucleus	39.79	44.61
Solyc01g091630.2.1	Tomato	nucleus	41.09	42.14
Solyc12g005830.1.1	Tomato	nucleus	34.8	39.01
Solyc09g057530.1.1	Tomato	cytosol	6.18	37.96
Solyc11g022410.1.1	Tomato	extracellular	3.33	37.84
Solyc07g041850.1.1	Tomato	nucleus	29.93	37.06
Solyc03g026070.2.1	Tomato	nucleus	35.04	36.56
Solyc03g120620.2.1	Tomato	nucleus	33.25	36.13
Solyc04g025740.1.1	Tomato	nucleus	6.29	35.81
Solyc11g011940.1.1	Tomato	nucleus	28.98	34.03
Solyc09g066070.2.1	Tomato	cytosol	17.34	33.87
Solyc05g015030.1.1	Tomato	cytosol	18.76	33.33
Solyc08g062510.2.1	Tomato	nucleus	25.53	32.92
Solyc09g060140.2.1	Tomato	mitochondrion	14.37	32.88
Solyc06g035940.2.1	Tomato	nucleus	26.25	32.69
Solyc09g060130.1.1	Tomato	cytosol	17.22	32.66
Solyc09g066030.1.1	Tomato	nucleus	27.67	32.23
Solyc09g057540.2.1	Tomato	cytosol	18.88	31.99
Solyc07g026570.1.1	Tomato	nucleus	5.34	31.91
Solyc11g022430.1.1	Tomato	cytosol	6.77	31.84
Solyc07g026560.1.1	Tomato	cytosol	17.7	31.5
Solyc06g050160.2.1	Tomato	nucleus	24.35	31.39
Solyc10g018030.1.1	Tomato	cytosol	15.32	31.23
Solyc09g060170.1.1	Tomato	cytosol	12.71	31.1
Solyc11g022420.1.1	Tomato	cytosol	17.58	30.9
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	25.53	30.76
Solyc09g066050.2.1	Tomato	cytosol	20.19	30.74
Solyc10g006420.2.1	Tomato	cytosol	19.12	30.55
Solyc07g037910.1.1	Tomato	cytosol	7.24	28.91
Solyc10g018020.1.1	Tomato	extracellular	11.4	28.57
Solyc08g062520.2.1	Tomato	cytosol	17.34	28.57
Solyc04g025490.1.1	Tomato	cytosol	8.19	28.51
Solyc04g025480.1.1	Tomato	cytosol	21.73	27.94

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:K4CN00	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc08g076370.2	EnsemblPlants:Solyc08g076370.2.1	UniParc:UPI000276BCD1	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:60347927..60352903

Molecular Weight (calculated)

93513.9 Da

IEP (calculated)

4.924

GRAVY (calculated)

-0.426

Length

842 amino acids

Sequence
(BLAST)

001: MFGDCQLFSS MGMGGNNNNN NNVSSDTLYS SSIQNPNFNF MTMGGNNLPF NIFPPNNIIP KEENGLFKNK EEMDSGSGSE HIEGMSGNEL EPEQQQQQQQ
101: QGGKKKRYHR HTVRQIQEME ALFKECPHPD DKQRLKLSQD LGLKPRQVKF WFQNRRTQMK AQQDRSDNVI LRAENDNLKN ENYRLQAALR SIMCPTCGGP
201: AMLGEMGYDE QQLRLENARL KEEFERVCCL VSQYNGRGPM QGLGPPNPLL PPSLELDMSI NNFTSKFEDQ PDCADMVPVP LLMPDQNNSQ FSGGPMILEE
301: EKSLAMELAL SSMDELVKMC TSSDPLWIRA SNDSGKEVLN VEEYSRMFPW PVGVKQNGNE LKIEATRSSA VVIMNSITLV DAFLDTNKCI ELFPSIISRA
401: KTIQVATSGV SGHASGSLQL MFMEMQVLTP LVSTRECYFL RYCQQNVEEG SWAIVDFPLD SLHNNFPPPF PYFKRRPSGC IIQDMPNGYS RVTWVEHAEV
501: EENPVNQIFN HFVTSGVAFG AQRWLSILQR QCERLASLMA RNISDLGVIP SPEARKSLMN LAQRMIKTFC MNISTCCGQS WTALSDSPDD TVRITTRKVT
601: EPGQPNGLIL SAVSTSWLPY NHFQVFDLLR DERRRAQLDV LSNGNSLHEV AHIANGSHPG NCISLLRINV ASNSSQSVEL MLQESCTDDS GSLVVYTTVD
701: VDAIQLAMNG EDPSCIPLLP LGFVITPINN GQVNMNNSDN NVSGTEANSS QSSEKRQNLS SIQEYSGGCL LTVGLQVLAS TIPSAKLNLS SVTAINHHLC
801: NTVQQINAAL VAFYPDTEIT APSSPPPQQP KSSKQADENS NS

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.