Factsheet for TraesCS1B01G208400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS6A01G324500.1
TraesCS6B01G354900.3
TraesCS6D01G304300.1
TraesCS7A01G134600.1
TraesCS7A01G167900.1
TraesCS7B01G035800.1
TraesCS7B01G072700.1
TraesCS7D01G134000.1
TraesCS7D01G168700.1
TraesCSU01G150000.1
TraesCSU01G244000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	TraesCS6A01G324500.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS6B01G354900.3	AT1G73360.1	21798944
AT4G17710.1	TraesCS6D01G304300.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS7A01G167900.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS7B01G072700.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS7D01G168700.1	AT1G73360.1	21798944
AT4G17710.1	TraesCSU01G150000.1	AT1G73360.1	21798944
AT4G17710.1	TraesCSU01G244000.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS2A01G282200.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS2B01G299400.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS2D01G281000.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS7A01G134600.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS7B01G035800.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS7D01G134000.1	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G197300.1	Wheat	nucleus	97.87	98.64
TraesCS1A01G193400.1	Wheat	nucleus, plastid	96.4	98.28
HORVU1Hr1G050620.2	Barley	nucleus	96.85	97.4
Os10t0575600-01	Rice	nucleus	79.55	80.27
KXG38837	Sorghum	nucleus	78.54	79.25
Zm00001d030069_P004	Maize	nucleus	77.42	77.94
GSMUA_Achr5P14100_001	Banana	nucleus	56.07	66.01
GSMUA_Achr4P19010_001	Banana	nucleus	56.85	63.17
VIT_02s0012g02030.t01	Wine grape	nucleus	55.73	62.16
KRH74360	Soybean	nucleus	52.47	59.19
KRH39579	Soybean	nucleus	52.58	58.5
PGSC0003DMT400006155	Potato	nucleus	48.99	57.07
Solyc08g076370.2.1	Tomato	nucleus	52.58	55.58
AT5G46880.3	Thale cress	nucleus	47.87	51.57
CDY43458	Canola	nucleus	46.4	50.86
Bra017519.1-P	Field mustard	nucleus	46.63	50.86
CDY03177	Canola	nucleus	47.08	50.73
Bra024984.1-P	Field mustard	nucleus	45.06	50.44
CDY33492	Canola	nucleus	45.06	50.38
CDX77711	Canola	nucleus	46.18	49.94
AT4G17710.1	Thale cress	nucleus	39.55	49.65
CDY08866	Canola	nucleus	39.44	47.69
Bra021035.1-P	Field mustard	nucleus	38.76	47.0
CDX76559	Canola	nucleus	38.76	47.0
TraesCS6B01G354900.3	Wheat	nucleus	34.72	44.33
TraesCS2B01G497500.1	Wheat	nucleus	36.85	42.32
TraesCS7B01G208600.1	Wheat	nucleus	36.74	40.98
TraesCS7B01G072700.1	Wheat	nucleus	32.92	40.14
TraesCS6B01G269700.1	Wheat	nucleus	33.93	37.56
TraesCS7B01G072800.1	Wheat	nucleus	6.18	37.41
TraesCS5B01G315100.2	Wheat	nucleus	33.15	34.71
TraesCS2B01G419200.1	Wheat	nucleus	29.89	33.89
TraesCS3B01G331200.1	Wheat	nucleus	28.65	33.77
TraesCS1B01G045500.1	Wheat	nucleus	7.75	31.65
TraesCS4B01G227900.1	Wheat	nucleus	7.64	30.49
TraesCS3B01G138400.1	Wheat	nucleus	6.85	28.37
TraesCS3B01G138600.1	Wheat	nucleus	6.63	27.44
TraesCS3B01G354900.1	Wheat	nucleus	19.89	25.92
TraesCS5B01G330300.1	Wheat	nucleus	21.8	25.83
TraesCS3B01G138800.1	Wheat	nucleus	5.39	25.4
TraesCS4B01G084700.16	Wheat	extracellular, golgi	22.13	24.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS1B01G208400	EnsemblPlants:TraesCS1B01G208400.1	TIGR:cd00086	TIGR:cd08875
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:377965083..377969806

Molecular Weight (calculated)

96026.7 Da

IEP (calculated)

5.816

GRAVY (calculated)

-0.285

Length

890 amino acids

Sequence
(BLAST)

001: MFGDCQVLSS MAAMAAGGSS ADALFASPLM PNPGALAGFM SNSSAMPFHH HFSTNLIPKE EGVMGGLHMA KDEELDLDME MELSGGSGSG HLDGLLSFVD
101: VDDDRDQKPQ HSEPDGAGAE HHPSSSAAAA ASNGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD
201: NVILRAENES LKTDNYRLQA AIRNVVCPSC GHAAVIGDMS YEEQNLRIEN ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN
301: VYSRHFADCA EQQHGAMDLM ALPQQMASGG HGIAATASYL QGPMTPVVVQ EQDKQLVMEL ASTAADHLIK MCRTSEQLWA RRRGAGPSSG EVMDAEEHAR
401: MLSWPIDSGK QQQADVAHAA RTEGTRDSAV VIMNSITLVD AFLDANKWME LFPSIVCKAR TIQVIHHGAA SGHLSSGSLI LMQAEMQFLS PLVPVREVVF
501: FRYCVHNADE GTWSIVDFPA DGFQEELLQQ QQQQQQQTSS LVRCRRRPSG CIIQDAPNGY SRVVWVEHME VVGEEKPLQP VFKDHVAGGA AFGATRWVSV
601: LQRQCERLAS ELARSIADQG VIRTPEARTN MMKLSQRMIT AFCANISASG SQSWTALSDS TEDTVRITTR KNTEPGQPSG VILTAVSTSW LPFSHQQVFE
701: LLADEQQRCQ LEILSTGGSL HEVAHIANGS HPRNCISLLR INSASNSSQN VELLLQESSI HPDGGSLVVF ATVDVDAIQV TMSGEDPSYI PLLPMGFAIF
801: PATSPSPGAT SSDTTSNGET SPGNADEPAA GCLLTVGMQV LASAVPSAKL NLSSVTAINS HICNTIHQIT TALKGAGGGR TEPAPAGSDQ

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.