Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G168100.1 | Wheat | nucleus | 93.2 | 93.2 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 92.52 | 91.28 |
| TraesCS1B01G045500.1 | Wheat | nucleus | 32.65 | 22.02 |
| TraesCS4B01G227900.1 | Wheat | nucleus | 29.93 | 19.73 |
| TraesCS3B01G138400.1 | Wheat | nucleus | 27.89 | 19.07 |
| TraesCS3B01G138600.1 | Wheat | nucleus | 27.89 | 19.07 |
| TraesCS3B01G138800.1 | Wheat | nucleus | 21.77 | 16.93 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 48.3 | 9.73 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 44.9 | 9.47 |
| TraesCS2B01G497500.1 | Wheat | nucleus | 42.18 | 8.0 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 42.18 | 7.77 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 40.82 | 7.46 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 41.5 | 7.18 |
| TraesCS3B01G331200.1 | Wheat | nucleus | 36.73 | 7.15 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 35.37 | 6.62 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 32.65 | 6.39 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 37.41 | 6.18 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 25.85 | 5.56 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 29.25 | 5.3 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G072800.1 | EnsemblPlantsGene:TraesCS7B01G072800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 |
| PFAM:PF00046 | PFscan:PS50071 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | TIGR:cd00086 |
| MapMan:15.5.3.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:80709285..80709978
Molecular Weight (calculated)
17531.6 Da
IEP (calculated)
7.507
GRAVY (calculated)
-1.271
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGDHQEGG SDSQQQLQER RKRQRRHTPE QVQKLEESYK KYDHPNEIQC AQLGRELGLE TKQVRSWFQN HRTQIRIEHE RLENRFLRWE NMSLRSEIMA
101: VREALKNSAT CPNCAPKDCI DQQELNRENA RLKVGLLHCT TSFQDEP
101: VREALKNSAT CPNCAPKDCI DQQELNRENA RLKVGLLHCT TSFQDEP
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RSANSSQSNM LILQESCTDP TASFVIYAPV DIVAMNIVLN GGDPDYVALL PSGFAILPDG NANSGAPGGD GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN
701: NLIACTVERI KASMSCETA
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RSANSSQSNM LILQESCTDP TASFVIYAPV DIVAMNIVLN GGDPDYVALL PSGFAILPDG NANSGAPGGD GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN
701: NLIACTVERI KASMSCETA
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.