Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- extracellular 2
- plastid 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G231300.2 | Wheat | nucleus | 82.86 | 87.05 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 83.85 | 84.47 |
| Zm00001d019477_P001 | Maize | nucleus | 33.29 | 36.68 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 33.79 | 36.48 |
| Zm00001d004234_P001 | Maize | nucleus | 31.57 | 36.21 |
| EER98409 | Sorghum | nucleus | 32.43 | 36.03 |
| OQU81266 | Sorghum | nucleus | 34.03 | 35.89 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 28.73 | 33.43 |
| OQU81174 | Sorghum | nucleus | 29.22 | 32.11 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 30.21 | 30.47 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 31.69 | 30.24 |
| TraesCS3B01G138600.1 | Wheat | nucleus | 7.89 | 29.77 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 26.51 | 29.45 |
| TraesCS7B01G072800.1 | Wheat | nucleus | 5.3 | 29.25 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 27.87 | 28.79 |
| Zm00001d004230_P030 | Maize | nucleus | 28.73 | 28.62 |
| TraesCS2B01G497500.1 | Wheat | nucleus | 27.25 | 28.52 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 27.99 | 28.45 |
| TraesCS4B01G227900.1 | Wheat | nucleus | 7.77 | 28.25 |
| TraesCS1B01G045500.1 | Wheat | nucleus | 7.52 | 27.98 |
| TraesCS3B01G138800.1 | Wheat | nucleus | 6.41 | 27.51 |
| TraesCS3B01G138400.1 | Wheat | nucleus | 7.27 | 27.44 |
| Os08t0292000-01 | Rice | nucleus | 25.4 | 26.04 |
| TraesCS3B01G331200.1 | Wheat | nucleus | 22.81 | 24.5 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 19.98 | 23.72 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 24.29 | 22.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS4B01G084700 | EnsemblPlants:TraesCS4B01G084700.16 | TIGR:cd00086 | TIGR:cd07812 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:83052986..83057092
Molecular Weight (calculated)
88105.5 Da
IEP (calculated)
7.120
GRAVY (calculated)
-0.118
Length
811 amino acids
Sequence
(BLAST)
(BLAST)
001: MVASLPSLLC WKHCLGVKSG VGSICLVVVW WIWSGQRLGE HGALVVSPFG VDRRSTVAMV GEWQPQNGQV HDEIDLSIPV DDKDLIWSNT GTMNDDEDVA
101: TADEGITDAG SASHMRKRGR HANRQIQELE AMFQQCPHPD ENLRIALSKK VCMDPLRVKF WFQNRRNAKK NQNERQQNMV LRTENIMLEE ENRAMKAAIL
201: KKTCPTCKGP MVFFRPLTPE LRRLHMENAR LKAELLHRTA YLHGVSAGTA GSSRILCDLN VDPVMPLPLR QDDLMADTMG HCAPGGCASA AGGPEHAALE
301: RHVLAALREL MMLMKQGEPM WQPAALGGEV LDHQLYRATT LPGLLELPPP GFTANGTRDT GLVMCTGADL VRIFMDENCW SETFPDIVAS VSADNIGHGC
401: ICQGGVILMK AGLRVLSPGV SSCDVKFVRQ CQMIEQGVWA VVDVSLDANG TSELRAWNTG LPGACRVLPS GCLIKDMNNG YCKVAMIVNA EYDKGFMRSP
501: LHPLLSSGHT FSARRWLTSL QRRCEFLAQR LSPAYGISRA GGAITPEGRN NVLELARRMT ESFYVAISAP RGEAWRKVAD SRGSCGVGGE SFQLAMHVVT
601: PLAAPGEQAA GPVLCATTTV WLPEIPPQRV FDYICDVERR GEWDVLAEGA RVQEDASLAT AQFPLTGVSI LRPTVMGRGR GGSSCNKKLI LQQACGDAPC
701: MVVAYAPIDT ADLKDVMHGG RRASLSLLPS GFSILPDGVG DIQTDPLDAN PSAVDPIDHQ RSCGSLVSVL RQTHLIGGNL TAQTVDNFGN NVSGSIMKIK
801: DAVHAKRVMT V
101: TADEGITDAG SASHMRKRGR HANRQIQELE AMFQQCPHPD ENLRIALSKK VCMDPLRVKF WFQNRRNAKK NQNERQQNMV LRTENIMLEE ENRAMKAAIL
201: KKTCPTCKGP MVFFRPLTPE LRRLHMENAR LKAELLHRTA YLHGVSAGTA GSSRILCDLN VDPVMPLPLR QDDLMADTMG HCAPGGCASA AGGPEHAALE
301: RHVLAALREL MMLMKQGEPM WQPAALGGEV LDHQLYRATT LPGLLELPPP GFTANGTRDT GLVMCTGADL VRIFMDENCW SETFPDIVAS VSADNIGHGC
401: ICQGGVILMK AGLRVLSPGV SSCDVKFVRQ CQMIEQGVWA VVDVSLDANG TSELRAWNTG LPGACRVLPS GCLIKDMNNG YCKVAMIVNA EYDKGFMRSP
501: LHPLLSSGHT FSARRWLTSL QRRCEFLAQR LSPAYGISRA GGAITPEGRN NVLELARRMT ESFYVAISAP RGEAWRKVAD SRGSCGVGGE SFQLAMHVVT
601: PLAAPGEQAA GPVLCATTTV WLPEIPPQRV FDYICDVERR GEWDVLAEGA RVQEDASLAT AQFPLTGVSI LRPTVMGRGR GGSSCNKKLI LQQACGDAPC
701: MVVAYAPIDT ADLKDVMHGG RRASLSLLPS GFSILPDGVG DIQTDPLDAN PSAVDPIDHQ RSCGSLVSVL RQTHLIGGNL TAQTVDNFGN NVSGSIMKIK
801: DAVHAKRVMT V
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.