Factsheet for TraesCS5B01G315100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G320600.1	Wheat	nucleus	98.59	98.7
TraesCS5A01G314400.2	Wheat	nucleus	98.59	98.7
HORVU5Hr1G080700.2	Barley	nucleus	96.24	95.9
Os09t0526300-00	Rice	nucleus	14.59	94.66
HORVU0Hr1G013510.1	Barley	cytosol	15.41	94.24
EER99222	Sorghum	nucleus	81.53	79.47
Zm00001d021236_P004	Maize	nucleus	80.35	75.64
HORVU7Hr1G036950.2	Barley	cytosol	14.47	67.21
VIT_15s0048g02000.t01	Wine grape	nucleus	58.59	61.41
CDY18903	Canola	nucleus	50.47	60.85
CDX74762	Canola	nucleus	50.47	60.59
KRH40539	Soybean	nucleus	58.0	60.12
KRH00641	Soybean	nucleus	57.65	59.61
PGSC0003DMT400071377	Potato	nucleus	57.29	59.32
KRH48236	Soybean	nucleus	57.76	59.23
Solyc01g091630.2.1	Tomato	nucleus	57.18	59.2
TraesCS6B01G269700.1	Wheat	nucleus	55.88	59.08
KRH65144	Soybean	nucleus	57.53	58.49
Bra004934.1-P	Field mustard	nucleus	53.65	58.02
CDY51143	Canola	nucleus	53.76	57.85
Bra037355.1-P	Field mustard	nucleus	53.76	57.85
HORVU4Hr1G062510.2	Barley	cytosol	18.82	57.76
AT4G00730.1	Thale cress	nucleus	54.24	57.48
PGSC0003DMT400019986	Potato	nucleus	54.71	57.48
CDY07201	Canola	nucleus	53.18	57.36
CDX91894	Canola	nucleus	53.29	57.05
CDX74347	Canola	nucleus	52.71	56.49
CDX67855	Canola	nucleus	51.65	56.28
CDY45684	Canola	nucleus	51.88	56.25
Bra003439.1-P	Field mustard	nucleus	51.76	56.05
AT3G61150.1	Thale cress	nucleus	52.12	54.83
HORVU3Hr1G108430.1	Barley	cytosol	19.88	50.75
TraesCS2B01G419200.1	Wheat	nucleus	44.35	48.03
TraesCS2B01G497500.1	Wheat	nucleus	42.94	47.1
TraesCS7B01G208600.1	Wheat	nucleus	43.41	46.24
TraesCS6B01G354900.3	Wheat	nucleus	36.94	45.05
TraesCS7B01G072800.1	Wheat	nucleus	7.18	41.5
TraesCS7B01G072700.1	Wheat	nucleus	33.53	39.04
TraesCS3B01G331200.1	Wheat	nucleus	32.12	36.16
TraesCS1B01G045500.1	Wheat	nucleus	9.06	35.32
TraesCS4B01G227900.1	Wheat	nucleus	8.94	34.08
TraesCS5B01G330300.1	Wheat	nucleus	29.65	33.56
TraesCS1B01G208400.1	Wheat	nucleus	34.71	33.15
TraesCS3B01G138400.1	Wheat	nucleus	8.12	32.09
TraesCS3B01G138600.1	Wheat	nucleus	8.12	32.09
TraesCS4B01G084700.16	Wheat	extracellular, golgi	30.24	31.69
TraesCS3B01G138800.1	Wheat	nucleus	6.71	30.16
TraesCS3B01G354900.1	Wheat	nucleus	24.12	30.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF350	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS5B01G315100	EnsemblPlants:TraesCS5B01G315100.2	TIGR:cd00086	TIGR:cd08875
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:497213945..497219576

Molecular Weight (calculated)

90511.6 Da

IEP (calculated)

5.936

GRAVY (calculated)

-0.294

Length

850 amino acids

Sequence
(BLAST)

001: MSFGGMFDGA GSGVFSYDAG GGGPGMHNPG RLLAPPPIPR PGAGAGGGGF ASSTGLSLGL QTNMEGGGQL GGAFMGSTGS GGDGDSLGRA REDENDSRSG
101: SDNLDGASAD ELDPDNSNPR KKKKRYHRHT PQQIQELEAV FKECPHPDEK QRMELSRRLN LESRQVKFWF QNRRTQMKTQ IERHENALLR QENDKLRTEN
201: MTIREAMRSP TCGNCGGAAV LGEVSLEEQH LRIENSRLKD ELDRVCALAG KFLGRPVSAI SSPLSLPSSL CSGLDLAVGS NNGFMGMGMQ SIPDLMGGGS
301: AAMRLPAGIM GGGLDDGLGG DGGAIDRGAL LELGLAAMEE LVKVTQVDDP LWQPSLDIGL ETLNFDEYRR AFARVLGPSP AGYVSDATRE VGIAIINSVD
401: LVNSLMNEAR WSEMFPCVVA RASTMEIISS GMGGTRSGSI QLMRAELQVL SPLVPIREVT FLRFCKQHAD GLWAIVDVSV DGVLRPDSGT GAGPAGYMGC
501: RLLPSGCIVE DMQNGYAKVT WVVHAEYDEA AVHELYRPLL RSGQALGARR WLASLQRQCE YHAILCSNPH PNHGDRHEAI SPAGRRCMLR LAQRMADNFC
601: AGVCATAAQK WRRLDEWRVE GAGGRDPAGG EDKVRMMARQ SVGAPGEPPG VVLSATTSVR LPGTLPQRVF DYLRDEQRRG EWDILANGEA MQEMDHIAKG
701: QHHGNAVSLL RPNATSGNQN NMLILQETCT DASGSLVVYA PVDVQSMHVV MGGGDSAYVS LLPSGFAILP DGHTTPATAT DPSPQGSSPN AHAGSSNNNP
801: GSLVTVAFQI LVNNLPTAKL TVESVDTVSN LLSCTIQKIK SALQASIISP

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.