Factsheet for TraesCS4B01G227900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G072000.1	Wheat	nucleus	92.38	92.38
TraesCS4D01G228800.1	Wheat	nucleus	88.34	92.06
TraesCS3B01G138400.1	Wheat	nucleus	78.03	80.93
HORVU3Hr1G022070.1	Barley	nucleus	58.3	68.78
TraesCS1B01G045500.1	Wheat	nucleus	63.68	65.14
TraesCS3B01G138600.1	Wheat	nucleus	60.54	62.79
TraesCS3B01G138800.1	Wheat	nucleus	52.91	62.43
TraesCS7B01G072800.1	Wheat	nucleus	19.73	29.93
TraesCS6B01G269700.1	Wheat	nucleus	34.98	9.7
TraesCS6B01G354900.3	Wheat	nucleus	28.25	9.04
TraesCS5B01G315100.2	Wheat	nucleus	34.08	8.94
TraesCS5B01G330300.1	Wheat	nucleus	30.04	8.92
TraesCS2B01G497500.1	Wheat	nucleus	30.49	8.77
TraesCS7B01G208600.1	Wheat	nucleus	31.39	8.77
TraesCS7B01G072700.1	Wheat	nucleus	27.8	8.49
TraesCS3B01G331200.1	Wheat	nucleus	27.35	8.08
TraesCS4B01G084700.16	Wheat	extracellular, golgi	28.25	7.77
TraesCS1B01G208400.1	Wheat	nucleus	30.49	7.64
TraesCS2B01G419200.1	Wheat	nucleus	25.56	7.26
TraesCS3B01G354900.1	Wheat	nucleus	21.97	7.17
Solyc11g022410.1.1	Tomato	extracellular	0.45	1.35

Protein Annotations

EnsemblPlants:TraesCS4B01G227900.1	EnsemblPlantsGene:TraesCS4B01G227900	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:476570584..476571524

Molecular Weight (calculated)

26186.8 Da

IEP (calculated)

7.109

GRAVY (calculated)

-0.929

Length

223 amino acids

Sequence
(BLAST)

001: MDGEKSGVHN EFDLFMTSTH NHLFQHNHSD EMDDLLGAST IVGNTDDANV VVADHDNNDG ETHTEQRMST RRAKYHRLHS EQIQQLEAYN TYSINVSVFR
101: NCPYPEEKLR KDLSERLGMS AQQVKFWFQN KRTFSKGKMQ RWETQNCWVE NEKLKTERQA IMLAMQNKTC LKCRGVVVQT QHTSEFQRLY TENMRLKEEL
201: LHATAYLKEG IRQNGMSLPW ARD

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.