Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G473700.1 | Wheat | nucleus | 99.61 | 99.48 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 99.48 | 99.23 |
| HORVU2Hr1G106970.2 | Barley | nucleus, plastid | 98.97 | 98.71 |
| Os04t0627000-02 | Rice | cytosol, peroxisome | 62.45 | 82.59 |
| EES11464 | Sorghum | nucleus | 83.48 | 82.0 |
| Zm00001d002234_P003 | Maize | nucleus | 81.29 | 79.35 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 65.94 | 77.42 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 71.61 | 76.45 |
| Zm00001d026351_P003 | Maize | nucleus | 82.45 | 75.71 |
| VIT_10s0116g00680.t01 | Wine grape | nucleus | 69.16 | 73.83 |
| PGSC0003DMT400061859 | Potato | nucleus | 65.29 | 73.44 |
| VIT_12s0059g02310.t01 | Wine grape | nucleus | 71.23 | 72.92 |
| GSMUA_Achr10P... | Banana | nucleus | 66.45 | 72.03 |
| Solyc03g031760.2.1 | Tomato | cytosol | 58.32 | 71.86 |
| KRH13175 | Soybean | cytosol | 16.39 | 71.75 |
| Bra000807.1-P | Field mustard | nucleus | 54.97 | 71.36 |
| KRH56105 | Soybean | nucleus | 67.1 | 71.33 |
| PGSC0003DMT400029291 | Potato | nucleus | 64.0 | 71.16 |
| CDX90879 | Canola | nucleus | 65.68 | 71.09 |
| CDY21319 | Canola | nucleus | 65.55 | 70.95 |
| Solyc10g005330.2.1 | Tomato | nucleus | 65.16 | 70.93 |
| GSMUA_Achr11P... | Banana | plastid | 72.13 | 70.85 |
| KRH25398 | Soybean | plastid | 69.16 | 70.43 |
| CDY27417 | Canola | nucleus | 64.65 | 70.17 |
| CDX98703 | Canola | nucleus | 62.71 | 69.93 |
| CDX94054 | Canola | nucleus | 62.58 | 69.78 |
| CDX76399 | Canola | nucleus | 64.26 | 69.65 |
| CDY06167 | Canola | nucleus | 64.65 | 69.58 |
| CDY16639 | Canola | nucleus | 65.81 | 69.58 |
| Bra032478.1-P | Field mustard | nucleus | 64.52 | 69.54 |
| AT1G05230.5 | Thale cress | nucleus | 64.65 | 69.49 |
| CDX94586 | Canola | nucleus | 65.55 | 69.4 |
| KRH27601 | Soybean | nucleus | 65.29 | 69.13 |
| KRH22554 | Soybean | nucleus | 69.55 | 69.01 |
| Bra015401.1-P | Field mustard | nucleus | 64.0 | 68.89 |
| KRH26803 | Soybean | nucleus | 69.42 | 68.89 |
| Bra029527.1-P | Field mustard | nucleus | 66.19 | 68.86 |
| KRH77881 | Soybean | nucleus | 64.77 | 68.67 |
| AT4G04890.1 | Thale cress | nucleus | 65.81 | 68.64 |
| PGSC0003DMT400005277 | Potato | nucleus | 64.77 | 68.49 |
| AT4G21750.3 | Thale cress | nucleus | 66.58 | 67.72 |
| CDY66622 | Canola | nucleus | 63.74 | 67.58 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 69.55 | 67.54 |
| CDY10041 | Canola | nucleus | 64.77 | 67.2 |
| Solyc02g080260.2.1 | Tomato | nucleus | 64.9 | 66.98 |
| Bra038757.1-P | Field mustard | nucleus | 62.58 | 66.9 |
| CDX79091 | Canola | nucleus | 64.13 | 66.62 |
| Bra020872.1-P | Field mustard | nucleus | 63.87 | 66.18 |
| Bra013556.1-P | Field mustard | nucleus | 57.81 | 64.93 |
| CDY49515 | Canola | plasma membrane | 64.77 | 61.9 |
| CDY71572 | Canola | nucleus | 31.1 | 61.32 |
| CDY46842 | Canola | nucleus | 64.65 | 60.36 |
| CDY23096 | Canola | nucleus | 10.19 | 59.85 |
| KRG91238 | Soybean | nucleus | 54.32 | 57.59 |
| KRH35579 | Soybean | nucleus | 54.19 | 53.98 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 49.29 | 47.51 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 41.03 | 45.62 |
| VIT_19s0177g00240.t01 | Wine grape | cytosol, mitochondrion | 13.94 | 45.57 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 47.1 | 42.94 |
| TraesCS7B01G072800.1 | Wheat | nucleus | 8.0 | 42.18 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 38.84 | 41.23 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 41.42 | 40.89 |
| KRH22254 | Soybean | cytosol | 26.19 | 37.94 |
| PGSC0003DMT400037397 | Potato | cytosol | 24.0 | 37.88 |
| TraesCS3B01G331200.1 | Wheat | nucleus | 36.52 | 37.48 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 42.32 | 36.85 |
| Solyc10g006420.2.1 | Tomato | cytosol | 24.52 | 36.05 |
| KRH27078 | Soybean | extracellular, golgi, peroxisome | 14.84 | 34.85 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 28.77 | 32.65 |
| TraesCS4B01G227900.1 | Wheat | nucleus | 8.77 | 30.49 |
| TraesCS1B01G045500.1 | Wheat | nucleus | 8.52 | 30.28 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 28.77 | 29.69 |
| TraesCS3B01G138600.1 | Wheat | nucleus | 7.87 | 28.37 |
| TraesCS3B01G138400.1 | Wheat | nucleus | 7.87 | 28.37 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 28.52 | 27.25 |
| TraesCS3B01G138800.1 | Wheat | nucleus | 6.45 | 26.45 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF349 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS2B01G497500 | EnsemblPlants:TraesCS2B01G497500.1 | TIGR:cd00086 | TIGR:cd08875 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:694054407..694060937
Molecular Weight (calculated)
83459.0 Da
IEP (calculated)
5.845
GRAVY (calculated)
-0.235
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MMIPARHMPS SMIGRSSGGA PYGSSSALSL GQPNLLDGSN QHLLPHHLLE QIPARAAESG DNNGSGGGVG MIRGRDSMDP LGDEFESRSG SENVDGDAVD
101: NAEQDQDPNQ RPRKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKN QHERHENSQL RADNDKLRAE NMRYKEALSS
201: ASCPNCGGPA ALGEMSFDEH HLRVENARLR DEIDRISAIA AKYVGKPMVP FPVLSSPLAA APGASAYDVF AGAASVLQAP PDDKQQGVVV ELAVAAMEEL
301: LRMARLDDPL WATTVDQALA LDEEEYARMF IDPRGSLGPK QYGLVSEASR DAAVVIMTPA SLVEILMDVN QYAAVFSSIV SRAATLEVLS TGVAGCYDGA
401: LQVMSVEFQV PSPLVPTRES YFVRYCKRNA DGAWAVVDVS LDGLQGVKCR RRPSGCLIQE APNGYSKVTW VEHVEVDDRS VHNIYKPLVG SGLAFGARRW
501: VGVLGRQCER LASAMASNIP TSDIGVITSS EGRKSMLKLA ERMVASFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWLPVP
601: PKRVFDFLRD ETSRSEWDIL SNGGIVQEMA HIANGRDHGN CVSLLRVNST NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG
701: FAILPDGPAG TMHAAAGATG TGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKTAVISNGR ASPPQ
101: NAEQDQDPNQ RPRKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKN QHERHENSQL RADNDKLRAE NMRYKEALSS
201: ASCPNCGGPA ALGEMSFDEH HLRVENARLR DEIDRISAIA AKYVGKPMVP FPVLSSPLAA APGASAYDVF AGAASVLQAP PDDKQQGVVV ELAVAAMEEL
301: LRMARLDDPL WATTVDQALA LDEEEYARMF IDPRGSLGPK QYGLVSEASR DAAVVIMTPA SLVEILMDVN QYAAVFSSIV SRAATLEVLS TGVAGCYDGA
401: LQVMSVEFQV PSPLVPTRES YFVRYCKRNA DGAWAVVDVS LDGLQGVKCR RRPSGCLIQE APNGYSKVTW VEHVEVDDRS VHNIYKPLVG SGLAFGARRW
501: VGVLGRQCER LASAMASNIP TSDIGVITSS EGRKSMLKLA ERMVASFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWLPVP
601: PKRVFDFLRD ETSRSEWDIL SNGGIVQEMA HIANGRDHGN CVSLLRVNST NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG
701: FAILPDGPAG TMHAAAGATG TGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKTAVISNGR ASPPQ
001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
Arabidopsis Description
PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.