Factsheet for Bra013556.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79091	Canola	nucleus	97.25	89.95
Bra038757.1-P	Field mustard	nucleus	83.33	79.31
Bra020872.1-P	Field mustard	nucleus	85.94	79.28
AT4G21750.3	Thale cress	nucleus	87.1	78.87
Bra029527.1-P	Field mustard	nucleus	81.16	75.17
Bra000807.1-P	Field mustard	nucleus	62.9	72.7
KRH27601	Soybean	nucleus	71.16	67.08
KRH77881	Soybean	nucleus	71.01	67.03
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	63.33	66.21
Os04t0627000-02	Rice	cytosol, peroxisome	54.35	63.99
Bra032478.1-P	Field mustard	nucleus	65.07	62.45
Bra015401.1-P	Field mustard	nucleus	65.07	62.36
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	63.91	60.74
EES11464	Sorghum	nucleus	68.12	59.57
Bra000960.1-P	Field mustard	extracellular	10.0	58.97
EES13460	Sorghum	mitochondrion, nucleus	66.38	58.64
TraesCS2D01G473700.1	Wheat	nucleus	65.22	57.99
TraesCS2B01G497500.1	Wheat	nucleus	64.93	57.81
Zm00001d049443_P005	Maize	nucleus	66.52	57.66
TraesCS2A01G474000.1	Wheat	nucleus	64.93	57.66
Zm00001d000247_P001	Maize	plasma membrane	59.71	57.3
GSMUA_Achr10P...	Banana	nucleus	59.28	57.2
Zm00001d002234_P003	Maize	nucleus	65.8	57.18
Os08t0136100-01	Rice	nucleus	63.33	55.67
GSMUA_Achr11P...	Banana	plastid	63.33	55.39
Zm00001d026351_P003	Maize	nucleus	67.54	55.21
TraesCS7D01G305200.1	Wheat	nucleus	61.45	53.27
Zm00001d024701_P001	Maize	nucleus	61.45	53.2
TraesCS7A01G308400.1	Wheat	nucleus	61.3	53.14
TraesCS7B01G208600.1	Wheat	nucleus	61.3	53.01
EES14500	Sorghum	nucleus	62.17	52.7
Bra005588.1-P	Field mustard	nucleus	43.77	42.9
Bra037355.1-P	Field mustard	nucleus	48.84	42.66
Bra016578.1-P	Field mustard	nucleus	41.45	41.81
Bra003439.1-P	Field mustard	nucleus	46.96	41.27
Bra004934.1-P	Field mustard	nucleus	46.96	41.22
Bra021779.1-P	Field mustard	nucleus	43.04	40.8
Bra003846.1-P	Field mustard	nucleus	41.3	40.43
Bra015996.1-P	Field mustard	nucleus	41.45	39.89
Bra025938.1-P	Field mustard	nucleus	40.0	39.77
Bra028295.1-P	Field mustard	nucleus	38.26	38.71
Os08t0187500-01	Rice	nucleus	18.26	38.65
Bra003535.1-P	Field mustard	nucleus	37.39	34.4
Bra017519.1-P	Field mustard	nucleus	39.57	33.46
Bra024984.1-P	Field mustard	nucleus	37.54	32.58
Bra021035.1-P	Field mustard	nucleus	34.35	32.29
Bra020066.1-P	Field mustard	nucleus	30.87	31.23
Bra023611.1-P	Field mustard	nucleus	31.16	30.5
Bra032003.1-P	Field mustard	nucleus	30.29	30.33
Bra021363.1-P	Field mustard	nucleus	31.88	30.26
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	31.45	30.01
Bra003213.1-P	Field mustard	nucleus	30.58	29.72
Bra013898.1-P	Field mustard	nucleus	23.19	25.68
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	9.71	23.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra013556	EnsemblPlants:Bra013556.1	EnsemblPlants:Bra013556.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4DAP6	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002547168	SEG:seg

Description

AT4G21750 (E=6e-179) ATML1 | ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA01:+:6329548..6332659

Molecular Weight (calculated)

75866.0 Da

IEP (calculated)

5.248

GRAVY (calculated)

-0.312

Length

690 amino acids

Sequence
(BLAST)

001: MFESHQHMFD MTPKESGNDL GLTGSREDDF ETKSGAEVTM ENLLEEELQD PNQRPNKKKR YHRHTQRQIQ ELESFFKECP HPDDKQRKEL SRELNLEPLQ
101: IKFWFQNKRT QMKAQHERHD NSILKADNDK LRAENNRYKD ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI SSIAAKYVGK PLLPHSSPST
201: QLTSSHYIPS RSLGLEVGNF GTNHQTSFVG EMHGTSDIMR SVSIPCEADK PMIVELAVAA LEELVTMAQT GDPLWGLNDN LGEILNEEEY FRMFPRGIGP
301: KPIGFRSEAS RESTVVIMNH INLVEILMNV NQYSSVFCGI VSRALTLEVL STGIAGNYNG ALQVVTWVEH MEVDDRSVHT MYKPLVNTGL AFGAKRWVAT
401: LDRQCERLAS SMASNIPTGD LSVITSPEGR KSMLKLAERM VMSFFSGVGA STAHAWTTLA TTGSDDVRVM TRKSMDDPGR PPGIVLSAAT SFWIPVAPKR
501: VFDFLRDENS RSEWDILSNG GLVQKMAHIA NGRDPGNSIS LLRVNDTNSG PSNMLILQES CTDVSGSYVI YAPVDMTAMD VVLSGGDPDY VALLPSGFAI
601: LPDGGEGGNA SAGAEGGGNN RVVVNAGSLL TVAFQIIVDS VPTAKLSLGS VATVNSLIKC TVERIKGALA CNATELDPSY SCEQFFLYVY

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.