Factsheet for Bra015996.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021035.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73360.1	Bra021035.1-P	AT4G17710.1	21798944
AT1G73360.1	Bra025431.1-P	AT5G38420.1	21798944
AT1G73360.1	Bra028174.1-P	AT5G38420.1	21798944
AT1G73360.1	Bra028181.1-P	AT5G38420.1	21798944
AT1G73360.1	Bra028406.1-P	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96471	Canola	nucleus	99.44	99.3
Bra003846.1-P	Field mustard	nucleus	88.84	90.35
AT1G73360.1	Thale cress	nucleus	85.63	85.04
Os06t0208100-00	Rice	nucleus	13.53	75.19
Bra016578.1-P	Field mustard	nucleus	67.22	70.47
Bra025938.1-P	Field mustard	nucleus	67.5	69.74
VIT_17s0053g00780.t01	Wine grape	nucleus	65.55	66.2
KRH09477	Soybean	nucleus	66.11	66.02
KRH38939	Soybean	nucleus	65.83	65.37
Solyc03g098200.2.1	Tomato	nucleus	62.9	62.55
PGSC0003DMT400069312	Potato	nucleus	62.34	62.52
Solyc06g072310.2.1	Tomato	nucleus	62.06	62.06
KRH60596	Soybean	nucleus	61.37	61.71
KRH41898	Soybean	nucleus	61.51	61.16
Bra000960.1-P	Field mustard	extracellular	9.34	57.27
GSMUA_Achr10P...	Banana	nucleus	55.79	56.26
TraesCS6D01G304300.1	Wheat	nucleus	52.58	55.04
TraesCS6A01G324500.1	Wheat	nucleus	52.44	54.89
GSMUA_Achr6P05990_001	Banana	nucleus	45.89	54.56
Zm00001d018225_P001	Maize	nucleus	52.44	54.34
Zm00001d052133_P001	Maize	nucleus	52.72	54.15
TraesCS6B01G354900.3	Wheat	nucleus	52.3	53.8
EES05874	Sorghum	nucleus	53.0	53.75
GSMUA_Achr2P15140_001	Banana	nucleus	55.23	53.59
GSMUA_Achr7P11310_001	Banana	nucleus	54.81	53.4
Zm00001d044973_P001	Maize	nucleus	50.63	52.69
Os06t0207966-00	Rice	plastid	19.25	52.47
Zm00001d037140_P004	Maize	nucleus	50.21	52.4
GSMUA_Achr10P...	Banana	nucleus	49.65	52.2
EER89393	Sorghum	nucleus	50.21	51.43
Bra015401.1-P	Field mustard	nucleus	46.16	45.97
TraesCS7A01G167900.1	Wheat	nucleus	45.89	45.38
TraesCS7B01G072700.1	Wheat	nucleus	46.03	45.21
Bra032478.1-P	Field mustard	nucleus	45.33	45.2
TraesCS7D01G168700.1	Wheat	nucleus	46.03	45.08
Bra000807.1-P	Field mustard	nucleus	37.52	45.06
Bra029527.1-P	Field mustard	nucleus	45.47	43.76
Bra020872.1-P	Field mustard	nucleus	44.91	43.05
Bra038757.1-P	Field mustard	nucleus	43.38	42.9
Bra013556.1-P	Field mustard	nucleus	39.89	41.45
Bra037355.1-P	Field mustard	nucleus	44.63	40.51
Bra028295.1-P	Field mustard	nucleus	38.21	40.18
Bra003439.1-P	Field mustard	nucleus	43.1	39.36
Bra004934.1-P	Field mustard	nucleus	42.68	38.93
Bra005588.1-P	Field mustard	nucleus	37.66	38.35
Bra023611.1-P	Field mustard	nucleus	36.96	37.59
Bra021035.1-P	Field mustard	nucleus	38.08	37.19
Bra024984.1-P	Field mustard	nucleus	41.0	36.98
Bra017519.1-P	Field mustard	nucleus	41.84	36.76
Bra021779.1-P	Field mustard	nucleus	37.24	36.68
Bra032003.1-P	Field mustard	nucleus	34.73	36.14
Bra020066.1-P	Field mustard	nucleus	34.31	36.07
Bra021363.1-P	Field mustard	nucleus	35.7	35.21
Bra003213.1-P	Field mustard	nucleus	34.73	35.07
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	34.73	34.44
Bra003535.1-P	Field mustard	nucleus	35.7	34.13
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	12.13	30.42
Bra013898.1-P	Field mustard	nucleus	24.13	27.77
TraesCSU01G150000.1	Wheat	nucleus	7.95	26.15
TraesCSU01G244000.1	Wheat	nucleus	6.69	23.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra015996	EnsemblPlants:Bra015996.1	EnsemblPlants:Bra015996.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4DHL9
PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF490	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI0002541D2F	SEG:seg	:	:	:

Description

AT1G73360 (E=0.0) HDG11, EDT1, ATHDG11 | HDG11 (HOMEODOMAIN GLABROUS 11); DNA binding / transcription factor

Coordinates

chrA07:-:19893072..19896370

Molecular Weight (calculated)

78529.9 Da

IEP (calculated)

6.747

GRAVY (calculated)

-0.387

Length

717 amino acids

Sequence
(BLAST)

001: MSFVGGVGGS GSGGGDGGGS GSGSQQHHDG SETDRKKKRY HRHTAQQIQR LESSFKECPH PDDKQRNQLS RELGLAPRQI KFWFQNRRTQ LKAQHERADN
101: NALKAENDKI RCENIAIREA IKHAICPNCG GPPVNEDPYF DEHKLRIENA HLRDELERMS TVASKYMGRP ISSHLSTLHP LHISPLDLSM TGPSLDFDLL
201: PGSSMHSHPN NNLATISDMD KPLMNDIALT AMEELLRLFN TNEPLWTRAD GGREILDLGS YENLFPRSGN RGKNHNVRTE ASRSSGIVFM NAMTLVDMFM
301: DGVKWGELFP CIVASSKTLA VVSSGMGGTH EGALHLMYEE MAVLSPLVAT REFCELRYCQ MIEQGSWIVV NVSYHLPQFV SQSSNSYKFP SGCLIQDMPN
401: GYSKVTWVEH VETEEKEQTH ELYREMIHKG IAFGAERWVT TLQRMCERFA SLLAPATSSR DLGGVIPSPE GKRSMMRLAH RMVSNYCISV SRSNNTHSTV
501: VAELNEVGVR VTAHKSPEPN GTILCAATTF WLPNSPQNVF NFLKDERTRP QWDVLSNRNA VQEVAHIANG SHPGCCISVL RASNASQSQS NNMLILQETS
601: IDSSVALVVY SPVDLPALNI AMSGDDTSYI PLLSSGFAIS PDGNHSSSTT EQGGASTSSG FGGGGSLITV GFQIMVSNLP SAKLNMESVE TVNNLIGTTV
701: HQIKTGLNNC PSGSATA

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.