Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G324500.1 | Wheat | nucleus | 99.27 | 99.27 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 98.98 | 97.27 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 97.96 | 92.55 |
| Zm00001d052133_P001 | Maize | nucleus | 86.13 | 84.53 |
| Zm00001d018225_P001 | Maize | nucleus | 85.26 | 84.39 |
| EES05874 | Sorghum | nucleus | 87.01 | 84.3 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 67.88 | 63.52 |
| KRH38939 | Soybean | nucleus | 66.42 | 63.02 |
| KRH09477 | Soybean | nucleus | 65.84 | 62.81 |
| GSMUA_Achr10P... | Banana | nucleus | 65.11 | 62.73 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 64.09 | 61.83 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 65.55 | 60.76 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 64.53 | 60.05 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 52.55 | 59.7 |
| KRH60596 | Soybean | nucleus | 61.9 | 59.47 |
| KRH41898 | Soybean | nucleus | 62.04 | 58.95 |
| GSMUA_Achr10P... | Banana | nucleus | 57.23 | 57.48 |
| Solyc03g098200.2.1 | Tomato | nucleus | 60.44 | 57.42 |
| PGSC0003DMT400069312 | Potato | nucleus | 59.71 | 57.2 |
| Solyc06g072310.2.1 | Tomato | nucleus | 59.27 | 56.62 |
| CDX96744 | Canola | nucleus | 54.16 | 55.13 |
| AT1G17920.1 | Thale cress | nucleus | 55.04 | 54.88 |
| CDY26204 | Canola | nucleus | 50.51 | 54.32 |
| AT1G73360.1 | Thale cress | nucleus | 56.64 | 53.74 |
| CDX83884 | Canola | nucleus | 53.72 | 53.72 |
| CDY19185 | Canola | nucleus | 53.43 | 53.67 |
| Bra016578.1-P | Field mustard | nucleus | 53.58 | 53.66 |
| CDX68229 | Canola | nucleus | 54.6 | 53.2 |
| CDY26205 | Canola | nucleus | 53.14 | 52.75 |
| Bra025938.1-P | Field mustard | nucleus | 53.43 | 52.74 |
| CDX96471 | Canola | nucleus | 55.18 | 52.65 |
| Bra003846.1-P | Field mustard | nucleus | 54.16 | 52.62 |
| Bra015996.1-P | Field mustard | nucleus | 55.04 | 52.58 |
| CDY11109 | Canola | nucleus | 54.31 | 52.39 |
| CDX72984 | Canola | nucleus | 54.45 | 52.17 |
| CDY42097 | Canola | nucleus | 39.27 | 52.03 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 52.41 | 50.28 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 10.22 | 46.98 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 9.78 | 44.97 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.91 | 44.53 |
| KRH11810 | Soybean | nucleus | 44.53 | 42.78 |
| KRH36827 | Soybean | nucleus | 44.09 | 42.6 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 48.32 | 41.58 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 46.57 | 41.11 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 47.3 | 40.3 |
| AT3G03260.1 | Thale cress | nucleus | 40.58 | 39.77 |
| CDX85461 | Canola | cytosol | 40.73 | 39.57 |
| Bra023611.1-P | Field mustard | nucleus | 40.58 | 39.43 |
| CDY42301 | Canola | nucleus | 38.98 | 38.7 |
| Bra032003.1-P | Field mustard | nucleus | 38.69 | 38.46 |
| Bra020066.1-P | Field mustard | nucleus | 38.25 | 38.42 |
| Solyc09g066070.2.1 | Tomato | cytosol | 24.09 | 38.28 |
| CDY62389 | Canola | cytosol | 27.3 | 38.24 |
| CDY43137 | Canola | nucleus | 38.39 | 38.17 |
| CDY67945 | Canola | nucleus | 38.39 | 38.17 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 43.5 | 38.01 |
| CDY53691 | Canola | nucleus | 39.27 | 37.89 |
| AT5G17320.1 | Thale cress | nucleus | 39.71 | 37.88 |
| Bra003213.1-P | Field mustard | nucleus | 39.12 | 37.75 |
| KRH36826 | Soybean | nucleus | 39.27 | 37.73 |
| AT1G34650.1 | Thale cress | nucleus | 38.98 | 37.71 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 20.15 | 37.5 |
| CDY02713 | Canola | nucleus | 40.15 | 37.21 |
| CDY44946 | Canola | nucleus | 35.18 | 37.19 |
| CDY49937 | Canola | nucleus | 37.66 | 37.18 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 45.99 | 37.1 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 36.5 | 36.71 |
| PGSC0003DMT400051268 | Potato | cytosol | 26.72 | 36.67 |
| CDY21211 | Canola | nucleus | 37.08 | 36.6 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 38.54 | 36.51 |
| Bra021363.1-P | Field mustard | nucleus | 38.69 | 36.45 |
| Solyc11g011940.1.1 | Tomato | nucleus | 37.96 | 36.26 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.45 | 36.17 |
| Solyc10g018030.1.1 | Tomato | cytosol | 21.75 | 36.08 |
| PGSC0003DMT400085057 | Potato | cytosol | 24.96 | 35.77 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.96 | 35.76 |
| CDY16938 | Canola | nucleus | 34.31 | 35.61 |
| PGSC0003DMT400051266 | Potato | cytosol | 20.0 | 35.22 |
| Solyc10g018020.1.1 | Tomato | extracellular | 17.23 | 35.12 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 45.26 | 35.11 |
| Solyc08g062510.2.1 | Tomato | nucleus | 33.28 | 34.92 |
| CDY69499 | Canola | cytosol | 15.47 | 34.87 |
| Solyc09g057540.2.1 | Tomato | cytosol | 25.26 | 34.81 |
| Solyc09g066050.2.1 | Tomato | cytosol | 28.03 | 34.72 |
| Solyc09g060130.1.1 | Tomato | cytosol | 22.48 | 34.68 |
| KRH42428 | Soybean | nucleus | 38.25 | 34.61 |
| Solyc09g066030.1.1 | Tomato | nucleus | 36.5 | 34.58 |
| PGSC0003DMT400038820 | Potato | extracellular | 18.25 | 34.34 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.97 | 33.88 |
| Solyc05g015030.1.1 | Tomato | cytosol | 23.07 | 33.33 |
| Solyc11g022420.1.1 | Tomato | cytosol | 22.92 | 32.78 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 33.28 | 32.62 |
| Solyc07g026560.1.1 | Tomato | cytosol | 22.19 | 32.14 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.8 | 31.9 |
| PGSC0003DMT400036411 | Potato | nucleus | 24.09 | 31.43 |
| KRH42429 | Soybean | cytosol | 31.97 | 30.0 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.61 | 29.92 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 9.2 | 29.58 |
| TraesCS3D01G121300.1 | Wheat | nucleus | 8.91 | 29.33 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 33.87 | 29.22 |
| TraesCS4D01G228800.1 | Wheat | nucleus | 9.05 | 28.97 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 34.01 | 28.94 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.76 | 28.44 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 28.18 | 28.26 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 30.07 | 27.36 |
| TraesCS3D01G121500.1 | Wheat | nucleus | 8.47 | 26.01 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 10.51 | 25.17 |
| TraesCS7D01G217200.1 | Wheat | nucleus | 8.18 | 25.11 |
| TraesCS3D01G121400.1 | Wheat | golgi, nucleus | 8.91 | 15.72 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 |
| PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 |
| SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS6D01G304300 | EnsemblPlants:TraesCS6D01G304300.1 |
| TIGR:cd00086 | TIGR:cd08875 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:-:413269725..413272565
Molecular Weight (calculated)
75013.6 Da
IEP (calculated)
6.702
GRAVY (calculated)
-0.223
Length
685 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDDLVPG SEAHRRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRLHLS RELGLEPRQI KFWFQNRRTQ MKAQHERADN CFLRAENDKI RCENIAMREA
101: LKNVICPTCG GPHSGADDYF DEHKLRMENA HLKEELDRVS SLTSKYLGRP ITQLPSMQPL SMSSLELSVG GLGSPVALGP ALDLDPLGGS SPFQLPAPVS
201: EMERPMMAEM ATRAMDEFIR LAQAGEHLWV KAAGGREVLN VDTYDSIFAK PGSSSFRGPD VHVEGSRDSC LVLTSAIALV DTFMDSSKWT EFFPTIVTRA
301: RTIDVLVNGM AGRSESLVLM YEELHVMSPV VPTREFCFLR YCRQIEQGLW AIADVSVDLQ RDARYGAPPA RSRRLPSGCL IADMSNGYSK VTWVEHMETE
401: DKTPINQLYR DLVLSGAAFG AHRWLAALQR ACERHACLVT PPHRDIAGVT LEGKRSMMRL SQRMVGSFCA SLSASQQHRW TTLSGPGAGV DDAAGVRVMV
501: HRSTDPGQPS GVVLSAATSI WLPVSCDRVF AFVSDENTRS QWDVLSHGNP VQEVSRIPNG SHPGNSISLL RGLNASQNSM LILQESCADA SGSLVVYAPI
601: DLPAANVVMS GEDPSAIPLL PSGFTILPDG RASSSTGSVV TVAFQILVSS LPSSRLNAES VATVNSLIGT TVEQIKAALN CGSSH
101: LKNVICPTCG GPHSGADDYF DEHKLRMENA HLKEELDRVS SLTSKYLGRP ITQLPSMQPL SMSSLELSVG GLGSPVALGP ALDLDPLGGS SPFQLPAPVS
201: EMERPMMAEM ATRAMDEFIR LAQAGEHLWV KAAGGREVLN VDTYDSIFAK PGSSSFRGPD VHVEGSRDSC LVLTSAIALV DTFMDSSKWT EFFPTIVTRA
301: RTIDVLVNGM AGRSESLVLM YEELHVMSPV VPTREFCFLR YCRQIEQGLW AIADVSVDLQ RDARYGAPPA RSRRLPSGCL IADMSNGYSK VTWVEHMETE
401: DKTPINQLYR DLVLSGAAFG AHRWLAALQR ACERHACLVT PPHRDIAGVT LEGKRSMMRL SQRMVGSFCA SLSASQQHRW TTLSGPGAGV DDAAGVRVMV
501: HRSTDPGQPS GVVLSAATSI WLPVSCDRVF AFVSDENTRS QWDVLSHGNP VQEVSRIPNG SHPGNSISLL RGLNASQNSM LILQESCADA SGSLVVYAPI
601: DLPAANVVMS GEDPSAIPLL PSGFTILPDG RASSSTGSVV TVAFQILVSS LPSSRLNAES VATVNSLIGT TVEQIKAALN CGSSH
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.