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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68229 Canola nucleus 95.92 96.87
CDX96471 Canola nucleus 88.45 87.47
CDX72984 Canola nucleus 87.61 86.99
AT1G73360.1 Thale cress nucleus 84.79 83.38
Os06t0208100-00 Rice nucleus 13.66 75.19
CDX96744 Canola nucleus 67.32 71.03
CDY19185 Canola nucleus 67.46 70.23
CDX83884 Canola nucleus 67.04 69.49
CDY26205 Canola nucleus 67.32 69.28
CDY26204 Canola nucleus 62.11 69.23
CDY42097 Canola nucleus 50.28 69.05
VIT_17s0053g00780.t01 Wine grape nucleus 64.65 64.65
KRH09477 Soybean nucleus 64.79 64.07
KRH38939 Soybean nucleus 64.51 63.43
Solyc03g098200.2.1 Tomato nucleus 62.11 61.16
PGSC0003DMT400069312 Potato nucleus 60.56 60.14
KRH41898 Soybean nucleus 60.7 59.78
Solyc06g072310.2.1 Tomato nucleus 60.28 59.69
KRH60596 Soybean nucleus 59.86 59.61
GSMUA_Achr10P... Banana nucleus 54.79 54.71
TraesCS6D01G304300.1 Wheat nucleus 52.39 54.31
Zm00001d018225_P001 Maize nucleus 52.68 54.05
TraesCS6A01G324500.1 Wheat nucleus 52.11 54.01
Zm00001d052133_P001 Maize nucleus 52.68 53.58
TraesCS6B01G354900.3 Wheat nucleus 52.25 53.23
EES05874 Sorghum nucleus 52.82 53.04
GSMUA_Achr6P05990_001 Banana nucleus 44.93 52.9
GSMUA_Achr2P15140_001 Banana nucleus 54.79 52.64
Zm00001d044973_P001 Maize nucleus 50.99 52.54
Zm00001d037140_P004 Maize nucleus 50.56 52.26
GSMUA_Achr7P11310_001 Banana nucleus 53.8 51.9
EER89393 Sorghum nucleus 50.7 51.43
Os06t0207966-00 Rice plastid 19.01 51.33
GSMUA_Achr10P... Banana nucleus 49.3 51.32
CDX76399 Canola nucleus 45.77 45.45
CDX90879 Canola nucleus 45.77 45.39
CDY21319 Canola nucleus 45.77 45.39
TraesCS7A01G167900.1 Wheat nucleus 46.34 45.38
CDY27417 Canola nucleus 45.35 45.1
CDY06167 Canola nucleus 45.63 45.0
TraesCS7D01G168700.1 Wheat nucleus 46.34 44.95
TraesCS7B01G072700.1 Wheat nucleus 46.06 44.79
CDX98703 Canola nucleus 43.52 44.46
CDY16639 Canola nucleus 45.77 44.34
CDY66622 Canola nucleus 45.63 44.32
CDX94054 Canola nucleus 43.38 44.32
CDX94586 Canola nucleus 45.35 43.99
CDY10041 Canola nucleus 45.77 43.51
CDX79091 Canola nucleus 45.21 43.03
CDY18903 Canola nucleus 41.97 42.27
CDY71572 Canola nucleus 23.38 42.24
CDX74762 Canola nucleus 41.69 41.81
CDY31916 Canola nucleus 38.45 40.56
CDY07201 Canola nucleus 44.65 40.23
CDY23096 Canola nucleus 7.46 40.15
CDY00515 Canola nucleus 38.03 40.12
CDY51143 Canola nucleus 44.37 39.87
CDX74347 Canola nucleus 44.51 39.85
CDY49515 Canola plasma membrane 45.49 39.83
CDX91894 Canola nucleus 44.37 39.67
CDX67855 Canola nucleus 43.24 39.36
CDY45684 Canola nucleus 43.24 39.16
CDY46842 Canola nucleus 45.63 39.04
CDX85461 Canola cytosol 37.75 38.01
CDX76559 Canola nucleus 38.87 37.6
CDY08866 Canola nucleus 38.87 37.5
CDY33492 Canola nucleus 41.69 37.19
CDY43458 Canola nucleus 42.39 37.07
CDY48272 Canola nucleus 36.48 36.79
CDX77711 Canola nucleus 42.54 36.7
CDY12213 Canola nucleus 36.76 36.66
CDY67945 Canola nucleus 35.35 36.43
CDY03177 Canola nucleus 42.25 36.32
CDY02713 Canola nucleus 37.61 36.13
CDY42301 Canola nucleus 35.07 36.09
CDY43137 Canola nucleus 34.93 35.99
CDY53691 Canola nucleus 35.77 35.77
CDY62389 Canola cytosol 24.51 35.58
CDY44946 Canola nucleus 32.39 35.49
CDY19129 Canola nucleus 36.2 35.35
CDY49937 Canola nucleus 34.51 35.3
CDY21211 Canola nucleus 34.23 35.01
CDY15339 Canola nucleus 35.92 34.88
CDY30748 Canola endoplasmic reticulum 28.45 34.41
CDY16938 Canola nucleus 31.97 34.39
CDX89415 Canola cytosol, mitochondrion 8.31 33.15
CDY69499 Canola cytosol 14.08 32.89
CDX79408 Canola nucleus 35.92 32.69
CDX67929 Canola nucleus 35.63 32.31
CDY39874 Canola plasma membrane 8.03 29.69
CDX89416 Canola nucleus 25.07 27.43
CDX94443 Canola cytosol 23.66 26.75
TraesCSU01G150000.1 Wheat nucleus 8.17 26.61
TraesCSU01G244000.1 Wheat nucleus 6.76 23.3
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.3Gene3D:3.30.530.20GO:A0A078FDU6UniProt:A0A078FDU6EnsemblPlants:CDY11109
ProteinID:CDY11109ProteinID:CDY11109.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0008289GO:GO:0009058GO:GO:0009987
GO:GO:0043565EnsemblPlantsGene:GSBRNA2T00049089001InterPro:Homeobox-like_sfInterPro:Homeobox_CSInterPro:Homeobox_domInterPro:IPR001356
InterPro:IPR002913InterPro:IPR023393PFAM:PF00046PFAM:PF01852ScanProsite:PS00027PFscan:PS50071
PFscan:PS50848PANTHER:PTHR24326PANTHER:PTHR24326:SF490SMART:SM00234SMART:SM00389SUPFAM:SSF46689
SUPFAM:SSF55961InterPro:START-like_dom_sfInterPro:START_lipid-bd_domUniParc:UPI0004EE5EF9SEG:seg:
Description
BnaC06g23610DBnaC06g23610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDU6]
Coordinates
chrLK032009:+:358330..361692
Molecular Weight (calculated)
77596.9 Da
IEP (calculated)
6.646
GRAVY (calculated)
-0.342
Length
710 amino acids
Sequence
(BLAST)
001: MSFVVGGSGS GGGDGGDGDG GGRQRHDASE TDRKKKRYHR HTAQQIQRLE SSFRECPHPD DKQRNLLSKE LGLAPRQIKF WFQNRRTQLK AQHERADNSA
101: LKAENDKIRC ENIAIREALK HAICPNCGGP PVSEDPYLDE QKLRMENAHL REELERMSTV ASKYMGRPIS SHISTLHPMH ISPLDLSMTS LAGGPSLDFD
201: LLPGSSMSSN FAVSDMDKPI MNDIALTAMQ ELLRLVHTNE PLWSGSDGCG EVLNLGSYEN VFPRSSNRGK NHNVRIEASR SSGIVFMNAM SLVDMFMDSA
301: KWAELFPSIV AASKTLAVVS SGMGGGTHEG ALHLMYEEME VLSPLVATRE FCELRYCQQI EQGSWIVVNV SYHLPQFVSH SHSYRFPSGC LIQDMPNGYS
401: KVTWVEHTET EEKEPVNEMY REMVHKGIAF GAERWVTTLQ RMCERYASLL APAASSLVLV IPSPEGKRSM MRLAHRMVSN YCISVSRSNN TRSTVVAELN
501: EVGVRVTAHK SPEPNGTILS AATTFWLPNS PQNVFNFLKD ERTRPQWDVL SNSNAVQEVA HIANGSHPGC CISVLRASSA SQSNNMLILQ ETSIDSSGAL
601: VVYSPVDLSA LNIAMNGDDT SYIPILSSGF AISPDGNRNS PSAEQGGASS SSGYGGGGSL ITVGFQITVS NLPSAKLNME SVETVNNLIG TTVHQIKTGL
701: NNFPSASTTV
Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.