Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025938.1-P | Field mustard | nucleus | 95.94 | 95.39 |
| CDY19185 | Canola | nucleus | 92.9 | 93.99 |
| CDY26204 | Canola | nucleus | 86.67 | 93.88 |
| CDX96744 | Canola | nucleus | 84.64 | 86.78 |
| CDX83884 | Canola | nucleus | 85.07 | 85.69 |
| AT1G17920.1 | Thale cress | nucleus | 83.04 | 83.41 |
| CDY42097 | Canola | nucleus | 61.59 | 82.2 |
| Os06t0208100-00 | Rice | nucleus | 12.9 | 68.99 |
| CDX68229 | Canola | nucleus | 69.71 | 68.42 |
| CDX72984 | Canola | nucleus | 70.0 | 67.55 |
| CDX96471 | Canola | nucleus | 70.14 | 67.41 |
| CDY11109 | Canola | nucleus | 69.28 | 67.32 |
| KRH09477 | Soybean | nucleus | 63.91 | 61.42 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 63.19 | 61.41 |
| KRH38939 | Soybean | nucleus | 63.48 | 60.66 |
| PGSC0003DMT400069312 | Potato | nucleus | 60.29 | 58.18 |
| Solyc06g072310.2.1 | Tomato | nucleus | 60.0 | 57.74 |
| KRH60596 | Soybean | nucleus | 59.57 | 57.64 |
| Solyc03g098200.2.1 | Tomato | nucleus | 60.0 | 57.42 |
| KRH41898 | Soybean | nucleus | 58.84 | 56.31 |
| Os06t0207966-00 | Rice | plastid | 20.29 | 53.23 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 52.75 | 53.14 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 46.38 | 53.07 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 52.46 | 52.85 |
| GSMUA_Achr10P... | Banana | nucleus | 54.06 | 52.46 |
| Zm00001d052133_P001 | Maize | nucleus | 52.9 | 52.29 |
| EES05874 | Sorghum | nucleus | 53.48 | 52.19 |
| Zm00001d018225_P001 | Maize | nucleus | 52.17 | 52.02 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 52.46 | 51.94 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 54.06 | 50.47 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 53.77 | 50.41 |
| Zm00001d037140_P004 | Maize | nucleus | 49.71 | 49.93 |
| Zm00001d044973_P001 | Maize | nucleus | 49.71 | 49.78 |
| EER89393 | Sorghum | nucleus | 49.71 | 49.0 |
| GSMUA_Achr10P... | Banana | nucleus | 48.41 | 48.97 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 47.1 | 44.83 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 47.1 | 44.4 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 46.67 | 44.11 |
| CDY21319 | Canola | nucleus | 45.65 | 43.99 |
| CDX90879 | Canola | nucleus | 45.51 | 43.85 |
| CDY27417 | Canola | nucleus | 45.07 | 43.56 |
| CDX98703 | Canola | nucleus | 43.77 | 43.45 |
| CDY16639 | Canola | nucleus | 46.09 | 43.38 |
| CDX76399 | Canola | nucleus | 44.93 | 43.36 |
| CDX94054 | Canola | nucleus | 43.62 | 43.31 |
| CDX94586 | Canola | nucleus | 45.8 | 43.17 |
| CDY66622 | Canola | nucleus | 45.51 | 42.95 |
| CDY06167 | Canola | nucleus | 44.35 | 42.5 |
| CDX79091 | Canola | nucleus | 45.36 | 41.96 |
| CDY10041 | Canola | nucleus | 44.2 | 40.83 |
| CDY18903 | Canola | nucleus | 40.43 | 39.57 |
| CDX74762 | Canola | nucleus | 40.58 | 39.55 |
| CDY71572 | Canola | nucleus | 22.17 | 38.93 |
| CDY31916 | Canola | nucleus | 37.97 | 38.93 |
| CDY00515 | Canola | nucleus | 37.83 | 38.78 |
| CDY51143 | Canola | nucleus | 44.06 | 38.48 |
| CDY07201 | Canola | nucleus | 43.77 | 38.32 |
| CDX91894 | Canola | nucleus | 44.06 | 38.29 |
| CDX74347 | Canola | nucleus | 43.77 | 38.08 |
| CDY49515 | Canola | plasma membrane | 44.64 | 37.98 |
| CDY46842 | Canola | nucleus | 44.78 | 37.23 |
| CDX67855 | Canola | nucleus | 41.88 | 37.05 |
| CDY48272 | Canola | nucleus | 37.68 | 36.93 |
| CDY45684 | Canola | nucleus | 41.74 | 36.73 |
| CDX85461 | Canola | cytosol | 37.39 | 36.6 |
| CDY62389 | Canola | cytosol | 25.8 | 36.4 |
| CDY12213 | Canola | nucleus | 37.54 | 36.38 |
| CDY23096 | Canola | nucleus | 6.96 | 36.36 |
| CDX76559 | Canola | nucleus | 38.41 | 36.1 |
| CDY08866 | Canola | nucleus | 37.97 | 35.6 |
| CDY19129 | Canola | nucleus | 37.1 | 35.21 |
| CDY53691 | Canola | nucleus | 36.23 | 35.21 |
| CDY02713 | Canola | nucleus | 37.68 | 35.18 |
| CDY33492 | Canola | nucleus | 40.43 | 35.05 |
| CDY30748 | Canola | endoplasmic reticulum | 29.71 | 34.92 |
| CDY15339 | Canola | nucleus | 36.67 | 34.61 |
| CDY16938 | Canola | nucleus | 33.04 | 34.55 |
| CDX77711 | Canola | nucleus | 41.16 | 34.51 |
| CDY43458 | Canola | nucleus | 40.14 | 34.11 |
| CDY67945 | Canola | nucleus | 33.91 | 33.96 |
| CDY43137 | Canola | nucleus | 33.77 | 33.82 |
| CDY42301 | Canola | nucleus | 33.77 | 33.77 |
| CDY03177 | Canola | nucleus | 40.14 | 33.54 |
| CDY69499 | Canola | cytosol | 14.64 | 33.22 |
| CDY44946 | Canola | nucleus | 30.87 | 32.87 |
| CDY49937 | Canola | nucleus | 32.75 | 32.56 |
| CDY21211 | Canola | nucleus | 32.61 | 32.42 |
| CDX89415 | Canola | cytosol, mitochondrion | 8.26 | 32.02 |
| CDX67929 | Canola | nucleus | 36.23 | 31.93 |
| CDX79408 | Canola | nucleus | 35.8 | 31.67 |
| CDY39874 | Canola | plasma membrane | 7.83 | 28.12 |
| CDX89416 | Canola | nucleus | 24.78 | 26.35 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.26 | 26.15 |
| CDX94443 | Canola | cytosol | 23.04 | 25.32 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.67 | 22.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078GIB8 | UniProt:A0A078GIB8 | EnsemblPlants:CDY26205 |
| ProteinID:CDY26205 | ProteinID:CDY26205.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00034871001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EEDDB8 | SEG:seg | : | : |
Description
BnaA06g12120DBnaA06g12120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIB8]
Coordinates
chrLK032186:+:285989..288783
Molecular Weight (calculated)
76723.7 Da
IEP (calculated)
6.787
GRAVY (calculated)
-0.317
Length
690 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLGDSSET DKKKMKKRFH RHTPHQIHRL ESSFNECQHP DEKQRLQLSK ELGLSPRQIK FWFQNRRTQK KAQHERADNC ALKEENDRIR CENIAIREAI
101: KHAICLNCGD APLHEDSYFD EQKLRIENAH LREELEKVSS IAAQFMGRPL SHLPPLLNPM HVSPLELFHS GPSLDFDLLP GSSSSSMAVP TLPSQPNLVL
201: SDMDKSLMTN IAVTAMEELL RLTQTNEPLW IKTNGCRDVL NPQSYENMFP RSSGRGGKNF NLRKEATRSC GVVFTNAMTL VNMLMDSVKS SELFSSVVAS
301: SKTLAVVSSG VRGSHGDALH LMLEELQVLS PLVQTREFSV LRYCQQIENG TWAIVNISYE LPQFISHPGS YKLPSGCLIQ DLSNGYSKVT WVEHVEVEEE
401: EPIHEMFKDN IREGIAFGAE RWIATLQRMC ERFKALLEPA TSSRDLKGVI PTPEGKQSIM RLSQRMVSNF CLSVGTSNNT RTPVVSGLDA FGIRVTSYKS
501: QHEPNGMVLC AATSFWLPVS PQNVFNFLKD ERTRPQWDVL LNGSAVQEVA HIANGSHPGN CISVLRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLS
601: ALNMAMTGQD TSYIPILPSG FAVLPEGGRN NQTAEIKAEG GGSLITVGFQ IMVSSLQSGK LNMESMETVN NLISTTVHQI KTTLNSPSTA
101: KHAICLNCGD APLHEDSYFD EQKLRIENAH LREELEKVSS IAAQFMGRPL SHLPPLLNPM HVSPLELFHS GPSLDFDLLP GSSSSSMAVP TLPSQPNLVL
201: SDMDKSLMTN IAVTAMEELL RLTQTNEPLW IKTNGCRDVL NPQSYENMFP RSSGRGGKNF NLRKEATRSC GVVFTNAMTL VNMLMDSVKS SELFSSVVAS
301: SKTLAVVSSG VRGSHGDALH LMLEELQVLS PLVQTREFSV LRYCQQIENG TWAIVNISYE LPQFISHPGS YKLPSGCLIQ DLSNGYSKVT WVEHVEVEEE
401: EPIHEMFKDN IREGIAFGAE RWIATLQRMC ERFKALLEPA TSSRDLKGVI PTPEGKQSIM RLSQRMVSNF CLSVGTSNNT RTPVVSGLDA FGIRVTSYKS
501: QHEPNGMVLC AATSFWLPVS PQNVFNFLKD ERTRPQWDVL LNGSAVQEVA HIANGSHPGN CISVLRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLS
601: ALNMAMTGQD TSYIPILPSG FAVLPEGGRN NQTAEIKAEG GGSLITVGFQ IMVSSLQSGK LNMESMETVN NLISTTVHQI KTTLNSPSTA
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.