CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83710
CDX84824
CDX97806
CDY03627
CDY10749
CDY13725
CDY22835
CDY23988
CDY29658
CDY47130
CDY49036
CDY54388
CDY65223
CDY66467
CDY66468
CDY66732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	CDY03627	AT1G51355.1	21798944
AT3G61150.1	CDY22835	AT1G51355.1	21798944
AT3G61150.1	CDY49036	AT1G51355.1	21798944
AT3G61150.1	CDY54388	AT1G51355.1	21798944
AT3G61150.1	CDY65223	AT1G51355.1	21798944
AT3G61150.1	CDY66467	AT1G51355.1	21798944
AT3G61150.1	CDY66468	AT1G51355.1	21798944
AT3G61150.1	CDY66732	AT1G51355.1	21798944
AT3G61150.1	CDX84824	AT2G30590.1	21798944
AT3G61150.1	CDX97806	AT2G30590.1	21798944
AT3G61150.1	CDY10749	AT2G30590.1	21798944
AT3G61150.1	CDY23988	AT2G30590.1	21798944
AT3G61150.1	CDY29658	AT2G30590.1	21798944
AT3G61150.1	CDY47130	AT2G30590.1	21798944
AT3G61150.1	CDX83710	AT3G27580.1	21798944
AT3G61150.1	CDY13725	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003439.1-P	Field mustard	nucleus	99.1	98.47
CDY45684	Canola	nucleus	98.33	97.83
AT3G61150.1	Thale cress	nucleus	90.38	87.25
Os09t0526300-00	Rice	nucleus	14.49	86.26
CDY18903	Canola	nucleus	65.38	72.34
CDX74762	Canola	nucleus	65.51	72.18
VIT_15s0048g02000.t01	Wine grape	nucleus	69.49	66.83
PGSC0003DMT400071377	Potato	nucleus	69.74	66.26
Solyc01g091630.2.1	Tomato	nucleus	69.62	66.14
KRH00641	Soybean	nucleus	68.85	65.33
KRH48236	Soybean	nucleus	69.23	65.14
KRH40539	Soybean	nucleus	68.46	65.12
KRH65144	Soybean	nucleus	68.97	64.35
GSMUA_Achr1P18760_001	Banana	nucleus	61.67	63.62
CDY07201	Canola	nucleus	64.23	63.58
CDX74347	Canola	nucleus	64.49	63.43
CDY51143	Canola	nucleus	64.23	63.42
CDX91894	Canola	nucleus	64.23	63.1
PGSC0003DMT400019986	Potato	nucleus	64.1	61.8
GSMUA_Achr3P12410_001	Banana	nucleus	55.9	58.76
HORVU6Hr1G065300.3	Barley	nucleus	60.13	58.62
Os02t0674800-01	Rice	nucleus	60.38	58.58
TraesCS6D01G237000.1	Wheat	nucleus	60.26	58.46
TraesCS6A01G255800.1	Wheat	nucleus	60.13	58.33
Zm00001d040090_P002	Maize	nucleus	60.0	58.28
HORVU0Hr1G013510.1	Barley	cytosol	10.38	58.27
TraesCS6B01G269700.1	Wheat	nucleus	60.0	58.21
EES02604	Sorghum	nucleus	60.64	58.04
Os04t0569100-01	Rice	nucleus	57.31	55.46
CDY00515	Canola	nucleus	45.64	52.9
CDY31916	Canola	nucleus	45.51	52.75
EER99222	Sorghum	nucleus	58.85	52.64
CDX90879	Canola	nucleus	48.08	52.37
CDY21319	Canola	nucleus	47.95	52.23
TraesCS5D01G320600.1	Wheat	nucleus	56.41	51.83
HORVU5Hr1G080700.2	Barley	nucleus	56.67	51.82
Zm00001d040091_P001	Maize	nucleus	17.31	51.72
TraesCS5A01G314400.2	Wheat	nucleus	56.28	51.71
TraesCS5B01G315100.2	Wheat	nucleus	56.28	51.65
KXG26935	Sorghum	nucleus	53.08	51.62
CDX76399	Canola	nucleus	47.18	51.47
CDX98703	Canola	nucleus	45.77	51.37
CDX94054	Canola	nucleus	45.64	51.22
CDY16639	Canola	nucleus	48.08	51.16
CDX94586	Canola	nucleus	47.95	51.09
CDY27417	Canola	nucleus	46.28	50.56
CDY06167	Canola	nucleus	46.54	50.42
Zm00001d021236_P004	Maize	nucleus	57.82	49.94
CDY66622	Canola	nucleus	46.41	49.52
TraesCS2D01G398600.1	Wheat	nucleus	49.49	49.23
TraesCS2B01G419200.1	Wheat	nucleus	49.36	49.04
CDX79091	Canola	nucleus	46.79	48.93
CDY10041	Canola	nucleus	46.79	48.86
HORVU2Hr1G095210.1	Barley	nucleus	48.21	48.21
Zm00001d026088_P002	Maize	nucleus	51.41	48.08
TraesCS2A01G401200.3	Wheat	nucleus	49.1	47.88
CDY49515	Canola	plasma membrane	47.31	45.5
CDX89415	Canola	cytosol, mitochondrion	10.26	44.94
CDX96744	Canola	nucleus	38.72	44.87
CDY23096	Canola	nucleus	7.56	44.7
CDY46842	Canola	nucleus	47.05	44.22
CDX68229	Canola	nucleus	39.62	43.95
CDX83884	Canola	nucleus	38.59	43.94
CDY42097	Canola	nucleus	28.85	43.52
CDY71572	Canola	nucleus	21.92	43.51
CDX96471	Canola	nucleus	39.87	43.31
CDY11109	Canola	nucleus	39.36	43.24
CDX72984	Canola	nucleus	39.36	42.94
CDY19185	Canola	nucleus	37.31	42.67
CDY26204	Canola	nucleus	34.36	42.07
CDY26205	Canola	nucleus	37.05	41.88
CDY12213	Canola	nucleus	38.21	41.85
CDY48272	Canola	nucleus	37.56	41.62
HORVU4Hr1G062510.2	Barley	cytosol	14.74	41.52
HORVU7Hr1G036950.2	Barley	cytosol	9.62	40.98
CDY19129	Canola	nucleus	37.95	40.72
CDY15339	Canola	nucleus	37.82	40.36
CDY30748	Canola	endoplasmic reticulum	30.0	39.86
CDY39874	Canola	plasma membrane	9.49	38.54
CDX67929	Canola	nucleus	38.08	37.93
CDX79408	Canola	nucleus	37.82	37.82
CDY43458	Canola	nucleus	36.79	35.34
CDX77711	Canola	nucleus	36.67	34.75
CDY03177	Canola	nucleus	36.79	34.75
CDY33492	Canola	nucleus	35.13	34.42
CDY08866	Canola	nucleus	32.44	34.38
CDX89416	Canola	nucleus	28.46	34.21
CDX85461	Canola	cytosol	30.77	34.04
CDX76559	Canola	nucleus	31.92	33.92
CDY62389	Canola	cytosol	21.15	33.74
CDY69499	Canola	cytosol	13.08	33.55
CDY53691	Canola	nucleus	30.51	33.52
HORVU3Hr1G108430.1	Barley	cytosol	14.23	33.33
CDY16938	Canola	nucleus	27.56	32.58
CDY02713	Canola	nucleus	30.64	32.34
CDX94443	Canola	cytosol	26.03	32.32
CDY43137	Canola	nucleus	28.46	32.22
CDY67945	Canola	nucleus	28.46	32.22
CDY42301	Canola	nucleus	28.33	32.03
CDY49937	Canola	nucleus	27.69	31.12
CDY21211	Canola	nucleus	27.44	30.84
CDY44946	Canola	nucleus	25.51	30.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	GO:A0A078BTA1	EnsemblPlants:CDX67855	ProteinID:CDX67855	ProteinID:CDX67855.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00099053001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF487	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI0004EEF629	SEG:seg	:	:	:

Description

BnaA07g18950D

Coordinates

chrLK031787:+:2547452..2551373

Molecular Weight (calculated)

85420.4 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.363

Length

780 amino acids

Sequence
(BLAST)

001: MNFNGYLGDG SSDVPYSDHF SFSAAATMPH SRPFSSNGLS LGLQTNGVNG EAFETNVTRN KSRGGEDVES RSESDNAEAV SGDDLETGDK PPRKKKKRYH
101: RHTAKQIQDL ESVFKECAHP DEKQRLDLSR RLNLDPRQVK FWFQNRRTQM KTQIERHENA LLRQENDKLR AENMSVREAM RNPMCSNCGG PAVLGEVSME
201: EQHLRIENSR LKDELDRVCA LTGKFLGRSP SGSHHVPDSS LVLGVGVGSG GGFSLSSPSL PQASPRFEIS NGTGLATVNI QAPVSDFDQR SRYLDLALAA
301: MEELVKMAQR HEPLWIRSSE TGFEMLNKEE YDTSFSRVVG PKQDGFVSEA SKETGNVIIN SLALVETLMD SERWAEMFPS MISRTSTTEI ISSGMGGTRN
401: GALHLMHAEL QLLSPLVPVR QVSFLRFCKQ HAEGVWAVVD VSIDSIREGS SSSCRRLPSG CLVQDMANGY SKVTWIEHTE YDENRIHRLY RPLLSCGLAF
501: GAQRWMAALQ RQCECLTILM SSTVSPSRSP TPISCNGRKS MLKLAKRMTD NFCGGVCASS LQKWSKLNVG NVDEDVRIMT RKSVNDPGEP PGIVLNAATS
601: VWMPVSPKRL FDFLGNERLR SEWDILSNGG PMQEMAHIAK GHDHSNSVSL LRATAINANQ SSMLILQETS IDAAGAVVVY APVDIPAMQA VMNGGDSAYV
701: ALLPSGFAIL PSAPQLSEER NGNGSGGCME EGGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTVQK IKAALHCDSN

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.