Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03627 | Canola | plastid | 98.26 | 98.26 |
| Bra014270.1-P | Field mustard | plastid | 86.96 | 96.15 |
| CDY66468 | Canola | plastid | 86.96 | 96.15 |
| AT1G51355.1 | Thale cress | nucleus, plastid | 72.17 | 71.55 |
| CDY66732 | Canola | mitochondrion | 72.17 | 69.75 |
| CDY54388 | Canola | mitochondrion | 72.17 | 69.75 |
| CDY49036 | Canola | mitochondrion | 72.17 | 69.75 |
| CDY22835 | Canola | mitochondrion, plastid | 68.7 | 68.1 |
| CDY65223 | Canola | plastid | 67.83 | 67.24 |
| CDY19592 | Canola | cytosol | 42.61 | 44.95 |
| CDY06392 | Canola | cytosol | 40.0 | 40.35 |
| GSMUA_Achr1P22910_001 | Banana | cytosol, nucleus, plasma membrane, plastid | 26.09 | 40.0 |
| CDY68499 | Canola | cytosol | 34.78 | 37.38 |
| CDY37331 | Canola | nucleus | 37.39 | 37.07 |
| CDY68033 | Canola | nucleus | 33.91 | 36.45 |
| KRH73971 | Soybean | nucleus | 28.7 | 28.21 |
| CDY27555 | Canola | nucleus | 37.39 | 27.74 |
| KRG98388 | Soybean | plastid | 36.52 | 25.93 |
| KRH46471 | Soybean | nucleus | 38.26 | 23.78 |
| PGSC0003DMT400019013 | Potato | plastid | 30.43 | 22.88 |
| VIT_06s0004g02230.t01 | Wine grape | plastid | 34.78 | 16.33 |
Protein Annotations
| EnsemblPlants:CDY66467 | EnsemblPlantsGene:GSBRNA2T00054392001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF19 | ProteinID:CDY66467 | ProteinID:CDY66467.1 |
| SEG:seg | UniParc:UPI0004EE4273 | UniProt:A0A078JM57 | MapMan:13.1.1.3.2 | : | : |
Description
BnaAnng22280DBnaAnng22280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM57]
Coordinates
chrLK035279:+:5295..5642
Molecular Weight (calculated)
12402.0 Da
IEP (calculated)
11.382
GRAVY (calculated)
-0.457
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKGKKPIR RTTTRSRKGI KNPSPPCSTS SDVTSTSLST SISSTATSTS TIPASGCCTP ISKKSRIPEM LTCPPAPKKQ KVAQNFALSR RQISFFAPPD
101: VELFFLFAHG QQIKK
101: VELFFLFAHG QQIKK
001: MASKGKKPLR RTTTRRRKRS HFKNPSPPCS INSDVTSTSS TSTSPTSTAT PSPVSAESGC CTPEKSRIPE MLTCPPAPKK QKVAQNCALR RRQIAFFAPP
101: DVELFFVFAL GQQNNK
101: DVELFFVFAL GQQNNK
Arabidopsis Description
SMR9Cyclin-dependent protein kinase inhibitor SMR9 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECS5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.