Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G51355.1 | KRH06239 | AT1G54060.1 | 21798944 |
| AT1G51355.1 | KRH47662 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46471 | Soybean | nucleus | 59.88 | 52.43 |
| KRH73971 | Soybean | nucleus | 33.33 | 46.15 |
| CDY19592 | Canola | cytosol | 29.01 | 43.12 |
| CDY68033 | Canola | nucleus | 27.16 | 41.12 |
| CDY06392 | Canola | cytosol | 28.4 | 40.35 |
| PGSC0003DMT400019013 | Potato | plastid | 37.65 | 39.87 |
| AT1G51355.1 | Thale cress | nucleus, plastid | 28.4 | 39.66 |
| CDY68499 | Canola | cytosol | 25.93 | 39.25 |
| Bra018904.1-P | Field mustard | mitochondrion, plastid | 27.78 | 38.79 |
| CDY22835 | Canola | mitochondrion, plastid | 27.78 | 38.79 |
| GSMUA_Achr1P22910_001 | Banana | cytosol, nucleus, plasma membrane, plastid | 17.9 | 38.67 |
| KRH66969 | Soybean | mitochondrion, nucleus | 28.4 | 38.66 |
| AT3G20898.1 | Thale cress | cytosol, plastid | 25.31 | 37.96 |
| CDY65223 | Canola | plastid | 27.16 | 37.93 |
| Bra014270.1-P | Field mustard | plastid | 23.46 | 36.54 |
| CDY03627 | Canola | plastid | 25.93 | 36.52 |
| CDY66467 | Canola | plastid | 25.93 | 36.52 |
| CDY37331 | Canola | nucleus | 25.93 | 36.21 |
| KRH71971 | Soybean | nucleus | 27.78 | 36.0 |
| CDY66468 | Canola | plastid | 22.84 | 35.58 |
| CDY54388 | Canola | mitochondrion | 25.93 | 35.29 |
| CDY49036 | Canola | mitochondrion | 25.93 | 35.29 |
| Bra031241.1-P | Field mustard | nucleus | 30.25 | 35.0 |
| CDY66732 | Canola | mitochondrion | 25.31 | 34.45 |
| Bra030445.1-P | Field mustard | mitochondrion | 25.31 | 34.45 |
| Bra023914.1-P | Field mustard | nucleus, plastid | 28.4 | 32.62 |
| KRG95281 | Soybean | plastid | 29.01 | 32.41 |
| Bra001805.1-P | Field mustard | nucleus | 27.16 | 32.12 |
| KRH33113 | Soybean | nucleus | 25.93 | 31.82 |
| CDY27555 | Canola | nucleus | 27.78 | 29.03 |
| VIT_06s0004g02230.t01 | Wine grape | plastid | 32.1 | 21.22 |
Protein Annotations
| EMBL:ACUP02010881 | EMBL:BT096761 | EnsemblPlants:KRG98388 | EnsemblPlantsGene:GLYMA_18G070800 | EntrezGene:100806243 | PANTHER:PTHR33142 |
| PANTHER:PTHR33142:SF19 | ProteinID:KRG98388 | ProteinID:KRG98388.1 | SEG:seg | UniParc:UPI0001B16B86 | UniProt:C6TGL1 |
| MapMan:13.1.1.3.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:6629414..6630975
Molecular Weight (calculated)
17819.9 Da
IEP (calculated)
11.040
GRAVY (calculated)
-0.802
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSGRTTTA STRTTSKTTT TTRRTRQQRR TTATTTNFKK KQHNTKSNNK KQQEQVLVPT VLPSSCSSSS ISSQDSSNSK EVDNNMHGSA EVIDVVCNSN
101: TNSPCSTPKG QKFRIPEIST CPPAPKKPRV LSNCSLRRSP LSFFAPPDLE HFFFVALRDV SV
101: TNSPCSTPKG QKFRIPEIST CPPAPKKPRV LSNCSLRRSP LSFFAPPDLE HFFFVALRDV SV
001: MASKKARKPN RAEKKLTRSC FKKQVPQHNN INTNTIYSVP SPSPAAVLTS PGGCCTPKAK KSRIPEMLTC PPAPKKQRVS KNCVLRRRQI VFFAPPEIEL
101: FFVNAHDR
101: FFVNAHDR
Arabidopsis Description
SMR13Cyclin-dependent protein kinase inhibitor SMR13 [Source:UniProtKB/Swiss-Prot;Acc:F4IWB3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.