Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- extracellular 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37331 | Canola | nucleus | 68.79 | 83.62 |
| Bra031241.1-P | Field mustard | nucleus | 78.01 | 78.57 |
| Bra001805.1-P | Field mustard | nucleus | 71.63 | 73.72 |
| AT3G20898.1 | Thale cress | cytosol, plastid | 51.06 | 66.67 |
| CDY27555 | Canola | nucleus | 63.83 | 58.06 |
| Bra018904.1-P | Field mustard | mitochondrion, plastid | 33.33 | 40.52 |
| Bra030445.1-P | Field mustard | mitochondrion | 33.33 | 39.5 |
| Bra014270.1-P | Field mustard | plastid | 29.08 | 39.42 |
| GSMUA_Achr1P22910_001 | Banana | cytosol, nucleus, plasma membrane, plastid | 19.86 | 37.33 |
| KRH73971 | Soybean | nucleus | 24.11 | 29.06 |
| KRG98388 | Soybean | plastid | 32.62 | 28.4 |
| PGSC0003DMT400019013 | Potato | plastid | 27.66 | 25.49 |
| KRH46471 | Soybean | nucleus | 31.91 | 24.32 |
| VIT_06s0004g02230.t01 | Wine grape | plastid | 28.37 | 16.33 |
Protein Annotations
Description
AT3G20898 (E=3e-023) | unknown protein
Coordinates
chrA01:-:20993438..20993863
Molecular Weight (calculated)
15427.4 Da
IEP (calculated)
10.527
GRAVY (calculated)
-0.726
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSQKARKPN RAEKKLKRTH FKKPLPQHKN TDTTSILDHA SSSSMVSSCS STTTSSSHQD TNNYVPSPSP AVLTSLSPGE GGGGGGYCTP KAHKHRIPEL
101: LTCPPAPKKQ RVPQNCVLHR RQIVFFAPPE IELFFVKAVD Q
101: LTCPPAPKKQ RVPQNCVLHR RQIVFFAPPE IELFFVKAVD Q
001: MASKKARKPN RAEKKLTRSC FKKQVPQHNN INTNTIYSVP SPSPAAVLTS PGGCCTPKAK KSRIPEMLTC PPAPKKQRVS KNCVLRRRQI VFFAPPEIEL
101: FFVNAHDR
101: FFVNAHDR
Arabidopsis Description
SMR13Cyclin-dependent protein kinase inhibitor SMR13 [Source:UniProtKB/Swiss-Prot;Acc:F4IWB3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.