Factsheet for VIT_06s0004g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g00720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51355.1	VIT_09s0002g00720.t01	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P22910_001	Banana	cytosol, nucleus, plasma membrane, plastid	13.06	42.67
KRH73971	Soybean	nucleus	19.18	40.17
AT1G51355.1	Thale cress	nucleus, plastid	18.78	39.66
CDY68033	Canola	nucleus	17.14	39.25
Bra014270.1-P	Field mustard	plastid	16.33	38.46
CDY06392	Canola	cytosol	17.55	37.72
CDY66468	Canola	plastid	15.92	37.5
CDY68499	Canola	cytosol	16.33	37.38
Bra018904.1-P	Field mustard	mitochondrion, plastid	17.55	37.07
CDY22835	Canola	mitochondrion, plastid	17.55	37.07
VIT_08s0007g08240.t01	Wine grape	nucleus	20.0	36.84
CDY19592	Canola	cytosol	16.33	36.7
CDY37331	Canola	nucleus	17.14	36.21
CDY65223	Canola	plastid	17.14	36.21
CDY03627	Canola	plastid	16.73	35.65
Bra030445.1-P	Field mustard	mitochondrion	17.14	35.29
CDY66732	Canola	mitochondrion	17.14	35.29
AT3G20898.1	Thale cress	cytosol, plastid	15.51	35.19
CDY66467	Canola	plastid	16.33	34.78
CDY54388	Canola	mitochondrion	16.73	34.45
CDY49036	Canola	mitochondrion	16.73	34.45
PGSC0003DMT400019013	Potato	plastid	20.82	33.33
KRG98388	Soybean	plastid	21.22	32.1
Bra001805.1-P	Field mustard	nucleus	17.14	30.66
KRH46471	Soybean	nucleus	22.86	30.27
Bra031241.1-P	Field mustard	nucleus	16.73	29.29
CDY27555	Canola	nucleus	18.37	29.03
Bra023914.1-P	Field mustard	nucleus, plastid	16.33	28.37

Protein Annotations

EntrezGene:100257066	wikigene:100257066	MapMan:13.1.1.3.2	EMBL:AM489278	ProteinID:CAN73276	ProteinID:CAN73276.1
ProteinID:CBI16367	ProteinID:CBI16367.3	UniProt:D7SL39	EMBL:FN594951	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100257066	wikigene:LOC100257066	PANTHER:PTHR33142	PANTHER:PTHR33142:SF19	TMHMM:TMhelix
UniParc:UPI0001BE113A	ArrayExpress:VIT_06s0004g02230	EnsemblPlantsGene:VIT_06s0004g02230	EnsemblPlants:VIT_06s0004g02230.t01	RefSeq:XP_002285425	RefSeq:XP_002285425.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2665995..2667367

Molecular Weight (calculated)

28014.0 Da

IEP (calculated)

10.554

GRAVY (calculated)

0.034

Length

245 amino acids

Sequence
(BLAST)

001: MGCLQISLFV SKEVVSSLLP LFSVKFTCFK VPPRPYRFSR SFSALVLFFS HTLKLSSSSP MAQRRRTRRP RRTQYSRPPV QSSDPQSSMD HAADDNPSNT
101: PAVELESVDI SNNGFSTPKA QRFRIPEILT CPPAPKKRRP NYSLRRSPIA FFAPPDLELF FFFALGDVSP FFLFLGWILT PGVWRVHNVV GGFELVWVWL
201: LACVFQVKFE EVKKAHRLLF CVSPLLSFFS FWILPLMSDH ETSTA

Best Arabidopsis Sequence Match ( AT1G51355.1 )
(BLAST)

001: MASKGKKPLR RTTTRRRKRS HFKNPSPPCS INSDVTSTSS TSTSPTSTAT PSPVSAESGC CTPEKSRIPE MLTCPPAPKK QKVAQNCALR RRQIAFFAPP
101: DVELFFVFAL GQQNNK

Arabidopsis Description

SMR9Cyclin-dependent protein kinase inhibitor SMR9 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECS5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.