Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22835 | Canola | mitochondrion, plastid | 97.41 | 97.41 |
| CDY66468 | Canola | plastid | 65.52 | 73.08 |
| AT1G51355.1 | Thale cress | nucleus, plastid | 70.69 | 70.69 |
| CDY03627 | Canola | plastid | 67.24 | 67.83 |
| CDY66467 | Canola | plastid | 67.24 | 67.83 |
| CDY49036 | Canola | mitochondrion | 68.97 | 67.23 |
| CDY54388 | Canola | mitochondrion | 68.97 | 67.23 |
| CDY66732 | Canola | mitochondrion | 68.97 | 67.23 |
| CDY68499 | Canola | cytosol | 41.38 | 44.86 |
| CDY68033 | Canola | nucleus | 40.52 | 43.93 |
| CDY19592 | Canola | cytosol | 39.66 | 42.2 |
| CDY06392 | Canola | cytosol | 40.52 | 41.23 |
| GSMUA_Achr1P22910_001 | Banana | cytosol, nucleus, plasma membrane, plastid | 25.86 | 40.0 |
| CDY37331 | Canola | nucleus | 36.21 | 36.21 |
| KRH73971 | Soybean | nucleus | 30.17 | 29.91 |
| CDY27555 | Canola | nucleus | 37.07 | 27.74 |
| KRG98388 | Soybean | plastid | 37.93 | 27.16 |
| KRH46471 | Soybean | nucleus | 42.24 | 26.49 |
| PGSC0003DMT400019013 | Potato | plastid | 29.31 | 22.22 |
| VIT_06s0004g02230.t01 | Wine grape | plastid | 36.21 | 17.14 |
Protein Annotations
| EnsemblPlants:CDY65223 | EnsemblPlantsGene:GSBRNA2T00045426001 | ncoils:Coil | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF19 | ProteinID:CDY65223 |
| ProteinID:CDY65223.1 | SEG:seg | UniParc:UPI0004EB8205 | UniProt:A0A078JC72 | MapMan:13.1.1.3.2 | : |
Description
BnaC06g41020DBnaC06g41020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC72]
Coordinates
chrLK034699:-:3669..4019
Molecular Weight (calculated)
12651.2 Da
IEP (calculated)
11.277
GRAVY (calculated)
-0.621
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKGKKPIR GTPTRRIKRI KNPSSPCSIN SEVTSTSSST SISSTATSTS PSGCCTPISK KSRIPEMLTC PPAPKKQRVA QNFASRRRQI SFFAPPDVEL
101: FFVFALGHNH GQENDK
101: FFVFALGHNH GQENDK
001: MASKGKKPLR RTTTRRRKRS HFKNPSPPCS INSDVTSTSS TSTSPTSTAT PSPVSAESGC CTPEKSRIPE MLTCPPAPKK QKVAQNCALR RRQIAFFAPP
101: DVELFFVFAL GQQNNK
101: DVELFFVFAL GQQNNK
Arabidopsis Description
SMR9Cyclin-dependent protein kinase inhibitor SMR9 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECS5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.