Factsheet for GSMUA_Achr1P22910_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P05880_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51355.1	GSMUA_Achr3P05880_001	AT1G54060.1	21798944
AT1G51355.1	GSMUA_Achr8P23650_001	AT1G54060.1	21798944
AT1G51355.1	GSMUA_Achr9P14340_001	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66969	Soybean	mitochondrion, nucleus	46.67	29.41
Bra014270.1-P	Field mustard	plastid	40.0	28.85
CDY66468	Canola	plastid	38.67	27.88
AT3G20898.1	Thale cress	cytosol, plastid	38.67	26.85
KRH71971	Soybean	nucleus	44.0	26.4
CDY68499	Canola	cytosol	37.33	26.17
CDY68033	Canola	nucleus	37.33	26.17
CDY03627	Canola	plastid	40.0	26.09
CDY66467	Canola	plastid	40.0	26.09
CDY65223	Canola	plastid	40.0	25.86
CDY19592	Canola	cytosol	37.33	25.69
CDY22835	Canola	mitochondrion, plastid	38.67	25.0
Bra018904.1-P	Field mustard	mitochondrion, plastid	38.67	25.0
KRG95281	Soybean	plastid	48.0	24.83
VIT_08s0007g08240.t01	Wine grape	nucleus	44.0	24.81
CDY06392	Canola	cytosol	37.33	24.56
CDY49036	Canola	mitochondrion	38.67	24.37
CDY54388	Canola	mitochondrion	38.67	24.37
CDY37331	Canola	nucleus	37.33	24.14
KRH73971	Soybean	nucleus	37.33	23.93
AT1G51355.1	Thale cress	nucleus, plastid	36.0	23.28
CDY66732	Canola	mitochondrion	36.0	22.69
Bra030445.1-P	Field mustard	mitochondrion	36.0	22.69
KRH33113	Soybean	nucleus	38.67	21.97
Bra001805.1-P	Field mustard	nucleus	37.33	20.44
Bra031241.1-P	Field mustard	nucleus	37.33	20.0
Bra023914.1-P	Field mustard	nucleus, plastid	37.33	19.86
PGSC0003DMT400019013	Potato	plastid	40.0	19.61
CDY27555	Canola	nucleus	37.33	18.06
KRG98388	Soybean	plastid	38.67	17.9
KRH46471	Soybean	nucleus	40.0	16.22
VIT_06s0004g02230.t01	Wine grape	plastid	42.67	13.06

Protein Annotations

EnsemblPlants:GSMUA_Achr1P22910_001	EnsemblPlants:GSMUA_Achr1T22910_001	EnsemblPlantsGene:GSMUA_Achr1G22910_001	PANTHER:PTHR33142	PANTHER:PTHR33142:SF19	UniParc:UPI000295087A
UniProt:M0S299	MapMan:13.1.1.3.2	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G22910_001]

Coordinates

chr1:-:17230027..17230254

Molecular Weight (calculated)

8402.1 Da

IEP (calculated)

9.309

GRAVY (calculated)

-0.356

Length

75 amino acids

Sequence
(BLAST)

1: MSDLEEKRAI DIAAAGSSTP KAKTSRIPEH LSCPPAPKKR RVTAMRWSEN TPPVPFFTSP DLDLFFLYAL REISL

Best Arabidopsis Sequence Match ( AT3G20898.1 )
(BLAST)

001: MASKKARKPN RAEKKLTRSC FKKQVPQHNN INTNTIYSVP SPSPAAVLTS PGGCCTPKAK KSRIPEMLTC PPAPKKQRVS KNCVLRRRQI VFFAPPEIEL
101: FFVNAHDR

Arabidopsis Description

SMR13Cyclin-dependent protein kinase inhibitor SMR13 [Source:UniProtKB/Swiss-Prot;Acc:F4IWB3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.