Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014370.1-P | |
| Bra030909.1-P | |
| Bra037960.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G51355.1 | Bra014370.1-P | AT1G54060.1 | 21798944 |
| AT1G51355.1 | Bra030909.1-P | AT1G54060.1 | 21798944 |
| AT1G51355.1 | Bra037960.1-P | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66468 | Canola | plastid | 98.08 | 98.08 |
| CDY66467 | Canola | plastid | 96.15 | 86.96 |
| CDY03627 | Canola | plastid | 95.19 | 86.09 |
| AT1G51355.1 | Thale cress | nucleus, plastid | 78.85 | 70.69 |
| Bra018904.1-P | Field mustard | mitochondrion, plastid | 75.0 | 67.24 |
| Bra030445.1-P | Field mustard | mitochondrion | 69.23 | 60.5 |
| GSMUA_Achr1P22910_001 | Banana | cytosol, nucleus, plasma membrane, plastid | 28.85 | 40.0 |
| Bra031241.1-P | Field mustard | nucleus | 40.38 | 30.0 |
| Bra001805.1-P | Field mustard | nucleus | 38.46 | 29.2 |
| Bra023914.1-P | Field mustard | nucleus, plastid | 39.42 | 29.08 |
| KRH73971 | Soybean | nucleus | 31.73 | 28.21 |
| KRG98388 | Soybean | plastid | 36.54 | 23.46 |
| KRH46471 | Soybean | nucleus | 38.46 | 21.62 |
| PGSC0003DMT400019013 | Potato | plastid | 30.77 | 20.91 |
| VIT_06s0004g02230.t01 | Wine grape | plastid | 38.46 | 16.33 |
Protein Annotations
Description
AT1G51355 (E=2e-023) | unknown protein
Coordinates
chrA08:+:2075511..2075825
Molecular Weight (calculated)
11360.0 Da
IEP (calculated)
11.382
GRAVY (calculated)
-0.439
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKGKKPIR RTTTRGRKGI KNPSPPCSIS SDVTSTSTIP ASGCCTPISK KSRIPEMLTC PPAPKKQKVA QNFALSRRQI SFFAPPDVEL FFLFAHGQQI
101: KKIS
101: KKIS
001: MASKGKKPLR RTTTRRRKRS HFKNPSPPCS INSDVTSTSS TSTSPTSTAT PSPVSAESGC CTPEKSRIPE MLTCPPAPKK QKVAQNCALR RRQIAFFAPP
101: DVELFFVFAL GQQNNK
101: DVELFFVFAL GQQNNK
Arabidopsis Description
SMR9Cyclin-dependent protein kinase inhibitor SMR9 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECS5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.