Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19592 | Canola | cytosol | 65.0 | 83.49 |
| CDY06392 | Canola | cytosol | 65.71 | 80.7 |
| Bra023914.1-P | Field mustard | nucleus, plastid | 78.57 | 78.01 |
| Bra001805.1-P | Field mustard | nucleus | 72.14 | 73.72 |
| AT3G20898.1 | Thale cress | cytosol, plastid | 49.29 | 63.89 |
| Bra030445.1-P | Field mustard | mitochondrion | 36.43 | 42.86 |
| Bra018904.1-P | Field mustard | mitochondrion, plastid | 35.0 | 42.24 |
| Bra014270.1-P | Field mustard | plastid | 30.0 | 40.38 |
| GSMUA_Achr1P22910_001 | Banana | cytosol, nucleus, plasma membrane, plastid | 20.0 | 37.33 |
| KRH73971 | Soybean | nucleus | 25.71 | 30.77 |
| KRG98388 | Soybean | plastid | 35.0 | 30.25 |
| PGSC0003DMT400019013 | Potato | plastid | 30.0 | 27.45 |
| KRH46471 | Soybean | nucleus | 34.29 | 25.95 |
| VIT_06s0004g02230.t01 | Wine grape | plastid | 29.29 | 16.73 |
Protein Annotations
Description
AT3G20898 (E=4e-019) | unknown protein
Coordinates
chrA05:-:16744032..16744454
Molecular Weight (calculated)
15515.7 Da
IEP (calculated)
11.141
GRAVY (calculated)
-0.804
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRKARKPN RAEKKLKRTH FKKKLPRHKN TDTPTILDHT SSSTIVSSCS STTTTFSPED TSYSVHSPSP KVLTSSPGKG GVGGGCCTPK SQKSRIPEIL
101: TCPPAPKKKR VPQNCTLRRR QIVFFAPPEI ELFFVKANHQ
101: TCPPAPKKKR VPQNCTLRRR QIVFFAPPEI ELFFVKANHQ
001: MASKKARKPN RAEKKLTRSC FKKQVPQHNN INTNTIYSVP SPSPAAVLTS PGGCCTPKAK KSRIPEMLTC PPAPKKQRVS KNCVLRRRQI VFFAPPEIEL
101: FFVNAHDR
101: FFVNAHDR
Arabidopsis Description
SMR13Cyclin-dependent protein kinase inhibitor SMR13 [Source:UniProtKB/Swiss-Prot;Acc:F4IWB3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.