CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06239
KRH47662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51355.1	KRH06239	AT1G54060.1	21798944
AT1G51355.1	KRH47662	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98388	Soybean	plastid	52.43	59.88
KRH73971	Soybean	nucleus	29.19	46.15
CDY19592	Canola	cytosol	25.41	43.12
Bra018904.1-P	Field mustard	mitochondrion, plastid	27.03	43.1
CDY22835	Canola	mitochondrion, plastid	27.03	43.1
CDY65223	Canola	plastid	26.49	42.24
CDY06392	Canola	cytosol	25.41	41.23
CDY68033	Canola	nucleus	23.78	41.12
AT1G51355.1	Thale cress	nucleus, plastid	25.41	40.52
GSMUA_Achr1P22910_001	Banana	cytosol, nucleus, plasma membrane, plastid	16.22	40.0
AT3G20898.1	Thale cress	cytosol, plastid	23.24	39.81
CDY68499	Canola	cytosol	22.7	39.25
CDY03627	Canola	plastid	24.32	39.13
CDY54388	Canola	mitochondrion	24.86	38.66
CDY49036	Canola	mitochondrion	24.86	38.66
Bra014270.1-P	Field mustard	plastid	21.62	38.46
CDY66467	Canola	plastid	23.78	38.26
CDY66732	Canola	mitochondrion	24.32	37.82
Bra030445.1-P	Field mustard	mitochondrion	24.32	37.82
KRH71971	Soybean	nucleus	25.41	37.6
CDY66468	Canola	plastid	21.08	37.5
PGSC0003DMT400019013	Potato	plastid	29.73	35.95
CDY37331	Canola	nucleus	22.16	35.34
KRH66969	Soybean	mitochondrion, nucleus	22.7	35.29
Bra031241.1-P	Field mustard	nucleus	25.95	34.29
KRH33113	Soybean	nucleus	23.78	33.33
Bra001805.1-P	Field mustard	nucleus	24.32	32.85
Bra023914.1-P	Field mustard	nucleus, plastid	24.32	31.91
KRG95281	Soybean	plastid	24.86	31.72
CDY27555	Canola	nucleus	23.24	27.74
VIT_06s0004g02230.t01	Wine grape	plastid	30.27	22.86

Protein Annotations

EMBL:ACUP02005345	EMBL:BT093614	EnsemblPlants:KRH46471	EnsemblPlantsGene:GLYMA_08G335700	EntrezGene:100785545	ncoils:Coil
PANTHER:PTHR33142	PANTHER:PTHR33142:SF19	ProteinID:KRH46471	ProteinID:KRH46471.1	SEG:seg	UniParc:UPI0001B15E43
UniProt:C6T822	MapMan:13.1.1.3.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:45273574..45275093

Molecular Weight (calculated)

20940.9 Da

IEP (calculated)

10.640

GRAVY (calculated)

-0.865

Length

185 amino acids

Sequence
(BLAST)

001: MLVYNNLYHL LLNQNPPEQA FFPHCLKERK KMAPSGRTTT ASTRTTSKTT RRTRQQRRTT NFKKKQQQQH NTKSNNNKKQ QEEVPVPTVL PSSYCSSSSI
101: SSQDSSNSKE VDNMHGSAEV IDVCNSPCST PKGKKFRIPE ISTCPPAPKK PRVLSNCSLR RSPLSFFAPP DLEHFFFVAL RDVSV

Best Arabidopsis Sequence Match ( AT3G20898.1 )
(BLAST)

001: MASKKARKPN RAEKKLTRSC FKKQVPQHNN INTNTIYSVP SPSPAAVLTS PGGCCTPKAK KSRIPEMLTC PPAPKKQRVS KNCVLRRRQI VFFAPPEIEL
101: FFVNAHDR

Arabidopsis Description

SMR13Cyclin-dependent protein kinase inhibitor SMR13 [Source:UniProtKB/Swiss-Prot;Acc:F4IWB3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.