Factsheet for PGSC0003DMT400071377

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017808
PGSC0003DMT400019013
PGSC0003DMT400032816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	PGSC0003DMT400019013	AT1G51355.1	21798944
AT3G61150.1	PGSC0003DMT400017808	AT3G27580.1	21798944
AT3G61150.1	PGSC0003DMT400032816	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091630.2.1	Tomato	nucleus	98.66	98.66
VIT_15s0048g02000.t01	Wine grape	nucleus	85.99	87.05
Os09t0526300-00	Rice	nucleus	13.64	85.5
KRH40539	Soybean	nucleus	81.49	81.59
KRH00641	Soybean	nucleus	80.88	80.78
KRH48236	Soybean	nucleus	81.0	80.22
KRH65144	Soybean	nucleus	80.76	79.31
PGSC0003DMT400019986	Potato	nucleus	76.49	77.63
CDY18903	Canola	nucleus	61.14	71.21
AT4G00730.1	Thale cress	nucleus	69.55	71.2
GSMUA_Achr1P18760_001	Banana	nucleus	65.53	71.16
CDY51143	Canola	nucleus	68.45	71.14
Bra037355.1-P	Field mustard	nucleus	68.45	71.14
CDX74347	Canola	nucleus	68.7	71.12
CDX91894	Canola	nucleus	68.7	71.03
CDY07201	Canola	nucleus	67.97	70.81
CDX74762	Canola	nucleus	60.9	70.62
CDX67855	Canola	nucleus	66.26	69.74
CDY45684	Canola	nucleus	66.38	69.52
Bra003439.1-P	Field mustard	nucleus	66.14	69.17
AT3G61150.1	Thale cress	nucleus	66.02	67.08
Bra004934.1-P	Field mustard	nucleus	63.7	66.54
GSMUA_Achr3P12410_001	Banana	nucleus	57.37	63.48
Os02t0674800-01	Rice	nucleus	62.12	63.43
Zm00001d040090_P002	Maize	nucleus	62.0	63.39
HORVU6Hr1G065300.3	Barley	nucleus	61.39	63.0
HORVU0Hr1G013510.1	Barley	cytosol	10.6	62.59
EES02604	Sorghum	nucleus	62.12	62.58
TraesCS6A01G255800.1	Wheat	nucleus	61.27	62.56
TraesCS6B01G269700.1	Wheat	nucleus	61.14	62.44
TraesCS6D01G237000.1	Wheat	nucleus	61.14	62.44
Os04t0569100-01	Rice	nucleus	58.34	59.43
EER99222	Sorghum	nucleus	62.48	58.83
Zm00001d040091_P001	Maize	nucleus	18.64	58.62
PGSC0003DMT400061859	Potato	nucleus	48.36	57.62
HORVU5Hr1G080700.2	Barley	nucleus	59.56	57.33
TraesCS5B01G315100.2	Wheat	nucleus	59.32	57.29
TraesCS5D01G320600.1	Wheat	nucleus	59.2	57.24
TraesCS5A01G314400.2	Wheat	nucleus	59.2	57.24
PGSC0003DMT400029291	Potato	nucleus	48.11	56.67
Zm00001d021236_P004	Maize	nucleus	61.63	56.04
KXG26935	Sorghum	nucleus	54.32	55.61
PGSC0003DMT400005277	Potato	nucleus	48.84	54.71
PGSC0003DMT400037055	Potato	nucleus	52.86	53.45
TraesCS2B01G419200.1	Wheat	nucleus	49.21	51.47
TraesCS2D01G398600.1	Wheat	nucleus	48.72	51.02
HORVU2Hr1G095210.1	Barley	nucleus	48.11	50.64
TraesCS2A01G401200.3	Wheat	nucleus	49.21	50.5
Zm00001d026088_P002	Maize	nucleus	51.28	50.48
PGSC0003DMT400069312	Potato	nucleus	43.12	49.51
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	18.03	48.68
PGSC0003DMT400094124	Potato	nucleus	43.73	47.49
PGSC0003DMT400042908	Potato	nucleus	28.26	46.59
PGSC0003DMT400076898	Potato	cytosol	27.89	46.26
PGSC0003DMT400086035	Potato	nucleus	35.93	44.9
PGSC0003DMT400048971	Potato	nucleus	31.06	44.89
PGSC0003DMT400062468	Potato	cytosol	19.49	44.82
HORVU7Hr1G036950.2	Barley	cytosol	9.99	44.81
PGSC0003DMT400080861	Potato	nucleus	24.97	44.66
PGSC0003DMT400006770	Potato	nucleus	41.78	44.43
PGSC0003DMT400028195	Potato	nucleus	20.58	44.36
PGSC0003DMT400028197	Potato	cytosol	17.91	44.14
HORVU4Hr1G062510.2	Barley	cytosol	14.86	44.04
PGSC0003DMT400092271	Potato	nucleus	14.01	43.4
PGSC0003DMT400006155	Potato	nucleus	40.07	43.06
PGSC0003DMT400076902	Potato	nucleus	34.71	42.54
PGSC0003DMT400095329	Potato	cytosol	13.15	39.13
HORVU3Hr1G108430.1	Barley	cytosol	15.35	37.84
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.08	37.5
PGSC0003DMT400095083	Potato	cytosol	5.48	37.19
PGSC0003DMT400051268	Potato	cytosol	21.19	34.87
PGSC0003DMT400085057	Potato	cytosol	19.61	33.68
PGSC0003DMT400037397	Potato	cytosol	19.73	32.99
PGSC0003DMT400034503	Potato	cytosol, nucleus	27.04	32.6
PGSC0003DMT400038820	Potato	extracellular	13.89	31.32
PGSC0003DMT400036411	Potato	nucleus	19.85	31.05
PGSC0003DMT400051266	Potato	cytosol	14.13	29.82

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102587855	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	UniProt:M1CNN3	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400027770	PGSC:PGSC0003DMG400027770
EnsemblPlants:PGSC0003DMT400071377	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000296164A
RefSeq:XP_006339457.1	SEG:seg	:	:	:	:

Description

Cutin deficient 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400027770]

Coordinates

chr1:-:71062191..71068244

Molecular Weight (calculated)

89908.2 Da

IEP (calculated)

6.281

GRAVY (calculated)

-0.352

Length

821 amino acids

Sequence
(BLAST)

001: MNFGGFLDNN SGGGGARIVA DIPFNHNSSS NNDNKNNNMP TGAISQPRLL PQSLAKNMFN SPGLSLALQT GMEGQNEVTR MAENYEGNNS VGRRSREEEP
101: DSRSGSDNLE GASGDEQDAA DKPPRKKRYH RHTPQQIQEL ESLFKECPHP DEKQRLELSK RLSLETRQVK FWFQNRRTQM KTQLERHENS ILRQENDKLR
201: AENMSIREAM RNPICTNCGG PAMIGEISLE EQHLRIENAR LKDELDRVCA LAGKFLGRPI SSLVTSMPPP MPNSSLELGV GNNGYGGMSN VPTTLPLAPP
301: DFGVGISNSL PVVPSNRQST GIERSLERSM YLELALAAME ELVKLAQTDE PLWFRSIEGG RELLNHEEYI RTFTPCIGMR PNSFVSEASR ETGMVIINSL
401: ALVETLMDSN KWAEMFPCLI ARTSTTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPIREV NFLRFCKQHA EGVWAVVDVS IDTIRETSGA PTYPNCRRLP
501: SGCVVQDMPN GYSKVTWVEH AEYEEGANHH LYRQLISAGM GFGAQRWVAT LQRQCECLAI LMSSTVSARD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS
601: TVHKWNKLCA GNVDEDVRVM TRKSVDDPGE PAGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASAMNAN
701: QSSMLILQET CIDAAGALVV YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NGPSCNGGPD QRISGSLLTV AFQILVNSLP TAKLTVESVE
801: TVNNLISCTV QKIKAALQCE S

Best Arabidopsis Sequence Match ( AT4G00730.1 )
(BLAST)

001: MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES

Arabidopsis Description

ANL2Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.