Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051268 | Potato | cytosol | 72.49 | 56.51 |
| PGSC0003DMT400038820 | Potato | extracellular | 51.41 | 54.95 |
| Solyc09g066050.2.1 | Tomato | cytosol | 73.01 | 51.36 |
| PGSC0003DMT400085057 | Potato | cytosol | 55.53 | 45.19 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 70.95 | 40.53 |
| PGSC0003DMT400036411 | Potato | nucleus | 49.1 | 36.38 |
| CDY62389 | Canola | cytosol | 34.19 | 27.2 |
| CDY69499 | Canola | cytosol | 21.08 | 26.97 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 33.42 | 21.56 |
| CDY16938 | Canola | nucleus | 36.25 | 21.36 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 38.82 | 21.15 |
| KRH11810 | Soybean | nucleus | 38.05 | 20.76 |
| KRH36827 | Soybean | nucleus | 37.53 | 20.59 |
| CDX85461 | Canola | cytosol | 37.28 | 20.57 |
| Bra023611.1-P | Field mustard | nucleus | 37.28 | 20.57 |
| GSMUA_Achr10P... | Banana | nucleus | 37.28 | 20.39 |
| AT3G03260.1 | Thale cress | nucleus | 35.99 | 20.03 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 35.22 | 20.0 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 35.22 | 20.0 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 37.02 | 19.92 |
| CDY53691 | Canola | nucleus | 36.25 | 19.86 |
| Bra003213.1-P | Field mustard | nucleus | 36.25 | 19.86 |
| PGSC0003DMT400095083 | Potato | cytosol | 6.17 | 19.83 |
| CDY44946 | Canola | nucleus | 32.9 | 19.75 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 15.42 | 19.74 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 35.22 | 19.66 |
| GSMUA_Achr10P... | Banana | nucleus | 34.45 | 19.65 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 37.02 | 19.57 |
| Os06t0207966-00 | Rice | plastid | 13.11 | 19.39 |
| KRH36826 | Soybean | nucleus | 35.48 | 19.35 |
| CDY02713 | Canola | nucleus | 36.76 | 19.35 |
| AT1G34650.1 | Thale cress | nucleus | 34.96 | 19.21 |
| Bra020066.1-P | Field mustard | nucleus | 33.68 | 19.21 |
| Bra032003.1-P | Field mustard | nucleus | 33.93 | 19.16 |
| CDY42301 | Canola | nucleus | 33.93 | 19.13 |
| CDY43137 | Canola | nucleus | 33.68 | 19.01 |
| Zm00001d018225_P001 | Maize | nucleus | 33.68 | 18.93 |
| PGSC0003DMT400069312 | Potato | nucleus | 34.7 | 18.88 |
| PGSC0003DMT400076898 | Potato | cytosol | 23.91 | 18.79 |
| Zm00001d052133_P001 | Maize | nucleus | 33.42 | 18.62 |
| Zm00001d044973_P001 | Maize | nucleus | 32.9 | 18.58 |
| CDY67945 | Canola | nucleus | 32.9 | 18.58 |
| Zm00001d037140_P004 | Maize | nucleus | 32.65 | 18.49 |
| Bra021363.1-P | Field mustard | nucleus | 34.45 | 18.43 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 34.96 | 18.4 |
| EER89393 | Sorghum | nucleus | 32.9 | 18.29 |
| EES05874 | Sorghum | nucleus | 33.16 | 18.25 |
| CDY49937 | Canola | nucleus | 32.13 | 18.01 |
| PGSC0003DMT400062468 | Potato | cytosol | 16.45 | 17.93 |
| PGSC0003DMT400037397 | Potato | cytosol | 22.62 | 17.92 |
| CDY21211 | Canola | nucleus | 31.88 | 17.87 |
| AT5G17320.1 | Thale cress | nucleus | 32.39 | 17.55 |
| KRH42429 | Soybean | cytosol | 32.9 | 17.53 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 31.88 | 16.99 |
| PGSC0003DMT400061859 | Potato | nucleus | 30.08 | 16.98 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 31.62 | 16.97 |
| KRH42428 | Soybean | nucleus | 32.9 | 16.91 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 31.62 | 16.8 |
| PGSC0003DMT400029291 | Potato | nucleus | 29.82 | 16.64 |
| PGSC0003DMT400048971 | Potato | nucleus | 23.91 | 16.37 |
| PGSC0003DMT400005277 | Potato | nucleus | 30.08 | 15.96 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.4 | 15.91 |
| PGSC0003DMT400094124 | Potato | nucleus | 30.59 | 15.74 |
| PGSC0003DMT400006155 | Potato | nucleus | 29.56 | 15.05 |
| PGSC0003DMT400086035 | Potato | nucleus | 24.94 | 14.76 |
| PGSC0003DMT400019986 | Potato | nucleus | 29.82 | 14.34 |
| PGSC0003DMT400071377 | Potato | nucleus | 29.82 | 14.13 |
| PGSC0003DMT400006770 | Potato | nucleus | 26.74 | 13.47 |
| PGSC0003DMT400037055 | Potato | nucleus | 25.45 | 12.19 |
| PGSC0003DMT400028195 | Potato | nucleus | 10.8 | 11.02 |
| PGSC0003DMT400028197 | Potato | cytosol | 9.0 | 10.51 |
| PGSC0003DMT400076902 | Potato | nucleus | 16.97 | 9.85 |
| PGSC0003DMT400095329 | Potato | cytosol | 6.94 | 9.78 |
| PGSC0003DMT400042908 | Potato | nucleus | 11.83 | 9.24 |
| PGSC0003DMT400080861 | Potato | nucleus | 9.51 | 8.06 |
| Os06t0208100-00 | Rice | nucleus | 2.57 | 7.75 |
| TraesCSU01G244000.1 | Wheat | nucleus | 2.31 | 4.37 |
| TraesCSU01G150000.1 | Wheat | nucleus | 2.31 | 4.13 |
| PGSC0003DMT400092271 | Potato | nucleus | 1.29 | 1.89 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400051266 | EnsemblPlantsGene:PGSC0003DMG400019911 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| InterPro:IPR002913 | InterPro:IPR023393 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 |
| PFAM:PF01852 | PFscan:PS50848 | PGSC:PGSC0003DMG400019911 | SEG:seg | SUPFAM:SSF55961 | UniParc:UPI000296742E |
| UniProt:M1BRI9 | MapMan:15.5.3.3 | : | : | : | : |
Description
Homeobox protein GLABRA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400019911]
Coordinates
chr9:+:49217849..49224659
Molecular Weight (calculated)
44977.9 Da
IEP (calculated)
9.575
GRAVY (calculated)
-0.235
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEAMKKIMC PKCDGPPIGK EERTRVLKME NQRLREQVKW MNLFPTIVTK ARTIEVLDSG TWGGSIQLMY EKLHILSPLV EARDFFFIRC CRQLDPTTWI
101: MMDVSYDLFN EIQSGVPSYS WKFPSGCAIQ DMGNGQSKVT WVEHVQVYEK NQVHHIFRDL LCDRQTYGAK RWIVTLQRMS ERYNFAMGAI CPTRHDFKGE
201: GLKNTIQISQ RMVKSFFEIL SMTDNLDFPT SSRLNRGDRI SIRKNEEIVQ PKGFIATAAT SLWLPLSFQD VFNFFKDDKT RSQWDILIGG NNVIELAQVL
301: TGVLPRNSIT IIQVQFQLRL RSLWNGLSNA AEFARFRVCM SVLCPFEVGL LAGQLARICK GLFERREKEE EKEKKKQGFV RIVVVFVGG
101: MMDVSYDLFN EIQSGVPSYS WKFPSGCAIQ DMGNGQSKVT WVEHVQVYEK NQVHHIFRDL LCDRQTYGAK RWIVTLQRMS ERYNFAMGAI CPTRHDFKGE
201: GLKNTIQISQ RMVKSFFEIL SMTDNLDFPT SSRLNRGDRI SIRKNEEIVQ PKGFIATAAT SLWLPLSFQD VFNFFKDDKT RSQWDILIGG NNVIELAQVL
301: TGVLPRNSIT IIQVQFQLRL RSLWNGLSNA AEFARFRVCM SVLCPFEVGL LAGQLARICK GLFERREKEE EKEKKKQGFV RIVVVFVGG
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.