Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051268 | Potato | cytosol | 57.9 | 60.92 |
| PGSC0003DMT400085057 | Potato | cytosol | 52.19 | 57.32 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 73.33 | 55.08 |
| PGSC0003DMT400038820 | Potato | extracellular | 38.1 | 54.95 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 68.19 | 52.57 |
| PGSC0003DMT400051266 | Potato | cytosol | 36.38 | 49.1 |
| CDY69499 | Canola | cytosol | 20.57 | 35.53 |
| CDY62389 | Canola | cytosol | 32.57 | 34.97 |
| Os06t0207966-00 | Rice | plastid | 16.19 | 32.32 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 36.95 | 27.17 |
| PGSC0003DMT400076898 | Potato | cytosol | 24.57 | 26.06 |
| KRH36827 | Soybean | nucleus | 35.05 | 25.95 |
| CDX85461 | Canola | cytosol | 34.67 | 25.82 |
| AT3G03260.1 | Thale cress | nucleus | 34.29 | 25.75 |
| Bra023611.1-P | Field mustard | nucleus | 34.48 | 25.67 |
| Bra020066.1-P | Field mustard | nucleus | 32.57 | 25.07 |
| CDY42301 | Canola | nucleus | 32.95 | 25.07 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 14.48 | 25.0 |
| KRH11810 | Soybean | nucleus | 33.9 | 24.96 |
| Bra032003.1-P | Field mustard | nucleus | 32.57 | 24.82 |
| CDY43137 | Canola | nucleus | 32.38 | 24.67 |
| CDY53691 | Canola | nucleus | 33.14 | 24.51 |
| Bra003213.1-P | Field mustard | nucleus | 33.14 | 24.51 |
| CDY02713 | Canola | nucleus | 34.48 | 24.49 |
| CDY67945 | Canola | nucleus | 31.81 | 24.24 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 31.62 | 24.23 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 33.33 | 24.2 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 31.43 | 24.09 |
| AT1G34650.1 | Thale cress | nucleus | 32.38 | 24.01 |
| CDY44946 | Canola | nucleus | 29.52 | 23.92 |
| GSMUA_Achr10P... | Banana | nucleus | 31.05 | 23.9 |
| Zm00001d018225_P001 | Maize | nucleus | 31.43 | 23.84 |
| PGSC0003DMT400028197 | Potato | cytosol | 15.05 | 23.72 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 31.43 | 23.67 |
| GSMUA_Achr10P... | Banana | nucleus | 32.0 | 23.63 |
| PGSC0003DMT400062468 | Potato | cytosol | 16.0 | 23.53 |
| Bra021363.1-P | Field mustard | nucleus | 32.57 | 23.52 |
| PGSC0003DMT400061859 | Potato | nucleus | 30.86 | 23.51 |
| PGSC0003DMT400069312 | Potato | nucleus | 32.0 | 23.5 |
| KRH36826 | Soybean | nucleus | 31.81 | 23.42 |
| PGSC0003DMT400037397 | Potato | cytosol | 21.9 | 23.42 |
| PGSC0003DMT400029291 | Potato | nucleus | 31.05 | 23.39 |
| Zm00001d052133_P001 | Maize | nucleus | 31.05 | 23.35 |
| CDY49937 | Canola | nucleus | 30.86 | 23.34 |
| CDY21211 | Canola | nucleus | 30.86 | 23.34 |
| CDY16938 | Canola | nucleus | 29.33 | 23.33 |
| EES05874 | Sorghum | nucleus | 31.24 | 23.2 |
| AT5G17320.1 | Thale cress | nucleus | 31.62 | 23.12 |
| KRH42429 | Soybean | cytosol | 32.0 | 23.01 |
| Zm00001d044973_P001 | Maize | nucleus | 29.9 | 22.79 |
| EER89393 | Sorghum | nucleus | 30.29 | 22.71 |
| PGSC0003DMT400048971 | Potato | nucleus | 24.57 | 22.71 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 31.43 | 22.42 |
| Zm00001d037140_P004 | Maize | nucleus | 29.33 | 22.42 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 25.71 | 22.39 |
| KRH42428 | Soybean | nucleus | 32.0 | 22.19 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 30.86 | 21.92 |
| PGSC0003DMT400005277 | Potato | nucleus | 30.48 | 21.83 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 29.71 | 21.37 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 29.71 | 21.31 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 29.33 | 21.24 |
| PGSC0003DMT400094124 | Potato | nucleus | 29.33 | 20.37 |
| PGSC0003DMT400006155 | Potato | nucleus | 28.95 | 19.9 |
| PGSC0003DMT400071377 | Potato | nucleus | 31.05 | 19.85 |
| PGSC0003DMT400019986 | Potato | nucleus | 29.52 | 19.16 |
| PGSC0003DMT400006770 | Potato | nucleus | 27.81 | 18.91 |
| PGSC0003DMT400086035 | Potato | nucleus | 22.86 | 18.26 |
| PGSC0003DMT400037055 | Potato | nucleus | 27.62 | 17.86 |
| PGSC0003DMT400042908 | Potato | nucleus | 15.81 | 16.67 |
| PGSC0003DMT400076902 | Potato | nucleus | 20.38 | 15.97 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 10.67 | 15.91 |
| PGSC0003DMT400095329 | Potato | cytosol | 8.19 | 15.58 |
| PGSC0003DMT400095083 | Potato | cytosol | 3.43 | 14.88 |
| PGSC0003DMT400080861 | Potato | nucleus | 12.76 | 14.6 |
| PGSC0003DMT400028195 | Potato | nucleus | 8.57 | 11.81 |
| PGSC0003DMT400092271 | Potato | nucleus | 5.14 | 10.19 |
| TraesCSU01G244000.1 | Wheat | nucleus | 0.57 | 1.46 |
| TraesCSU01G150000.1 | Wheat | nucleus | 0.57 | 1.38 |
| Os06t0208100-00 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400036411 | EnsemblPlantsGene:PGSC0003DMG400014020 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | InterPro:IPR002913 |
| InterPro:START_lipid-bd_dom | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 | PFAM:PF01852 | PFscan:PS50848 | PGSC:PGSC0003DMG400014020 |
| SMART:SM00234 | SUPFAM:SSF55961 | UniParc:UPI000296A54A | UniProt:M1B3L6 | MapMan:15.5.3.3 | : |
Description
Homeobox protein GLABRA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014020]
Coordinates
chr10:-:39275010..39279958
Molecular Weight (calculated)
58792.9 Da
IEP (calculated)
5.212
GRAVY (calculated)
-0.258
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNLAPPNS TLGSLTDSSD ECLLRQTICG SPIGYNSSFH PENNNDNNNV RAHSINIKNI PIISQLEQEN YGFHHDNNGE KSVIFEIVVP AINEMLGLVY
101: VNEPLWVKSS VDEGWLIHRE SYDRTFSNSN RPYKSTARIE SSRSFGVVPM TAIDLIKNFR DPMYEKLHIL SPLVEARDFV FIRCCKQLDQ TTWIMVDVSY
201: DLFKEIKTCA PSYAWKFPSG CVIQDTGDGK SMVAWIEHVQ IDEKCQVNHI FRDLLCGRQT YGAERWIVTL QRMSERYNFA MPVTCATTDD SQGEGVKNVM
301: NLSQRMVKSF CETLSMTDKL GFSTSSHLNN EDRVSIRKNE EITQPKGFIA TAATSLWVPL SFETIFNLLK DNNTRCQWDV LSGGNNVTER DRVLTGTCSK
401: NYITFIQTMP IENNMLVLQE SSIDKMGAFL IYGPIDSTTY TSFLNGGDGE KVVILPSGII ISPDGRLASD MNSNGNAQNG SILTVALQKL ICANNSISQD
501: QHMEAMVYIQ SLLSSTVSKI KATLG
101: VNEPLWVKSS VDEGWLIHRE SYDRTFSNSN RPYKSTARIE SSRSFGVVPM TAIDLIKNFR DPMYEKLHIL SPLVEARDFV FIRCCKQLDQ TTWIMVDVSY
201: DLFKEIKTCA PSYAWKFPSG CVIQDTGDGK SMVAWIEHVQ IDEKCQVNHI FRDLLCGRQT YGAERWIVTL QRMSERYNFA MPVTCATTDD SQGEGVKNVM
301: NLSQRMVKSF CETLSMTDKL GFSTSSHLNN EDRVSIRKNE EITQPKGFIA TAATSLWVPL SFETIFNLLK DNNTRCQWDV LSGGNNVTER DRVLTGTCSK
401: NYITFIQTMP IENNMLVLQE SSIDKMGAFL IYGPIDSTTY TSFLNGGDGE KVVILPSGII ISPDGRLASD MNSNGNAQNG SILTVALQKL ICANNSISQD
501: QHMEAMVYIQ SLLSSTVSKI KATLG
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.