Factsheet for PGSC0003DMT400033830

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi, plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 3
extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048971	Potato	nucleus	46.88	29.05
PGSC0003DMT400095083	Potato	cytosol	8.24	23.97
PGSC0003DMT400061859	Potato	nucleus	41.48	21.19
PGSC0003DMT400029291	Potato	nucleus	40.34	20.37
PGSC0003DMT400038820	Potato	extracellular	20.17	19.51
PGSC0003DMT400028195	Potato	nucleus	20.74	19.16
PGSC0003DMT400005277	Potato	nucleus	39.77	19.1
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	16.19	18.75
PGSC0003DMT400094124	Potato	nucleus	39.77	18.52
PGSC0003DMT400095329	Potato	cytosol	13.35	17.03
Bra005588.1-P	Field mustard	nucleus	32.95	16.48
CDY48272	Canola	nucleus	32.95	16.48
CDY12213	Canola	nucleus	33.24	16.43
PGSC0003DMT400062468	Potato	cytosol	16.48	16.25
Bra021779.1-P	Field mustard	nucleus	33.52	16.21
CDY15339	Canola	nucleus	33.52	16.14
CDY19129	Canola	nucleus	33.24	16.09
PGSC0003DMT400071377	Potato	nucleus	37.5	16.08
PGSC0003DMT400006770	Potato	nucleus	33.81	15.41
PGSC0003DMT400076898	Potato	cytosol	21.59	15.35
PGSC0003DMT400042908	Potato	nucleus	21.59	15.26
AT2G32370.1	Thale cress	nucleus	31.25	15.17
PGSC0003DMT400080861	Potato	nucleus	19.6	15.03
PGSC0003DMT400037397	Potato	cytosol	20.74	14.87
PGSC0003DMT400037055	Potato	nucleus	34.09	14.78
PGSC0003DMT400092271	Potato	nucleus	11.08	14.72
PGSC0003DMT400019986	Potato	nucleus	33.52	14.59
PGSC0003DMT400086035	Potato	nucleus	26.99	14.46
PGSC0003DMT400069312	Potato	nucleus	29.26	14.41
PGSC0003DMT400006155	Potato	nucleus	31.25	14.4
PGSC0003DMT400051266	Potato	cytosol	15.91	14.4
PGSC0003DMT400085057	Potato	cytosol	19.32	14.23
PGSC0003DMT400051268	Potato	cytosol	19.03	13.43
PGSC0003DMT400028197	Potato	cytosol	12.5	13.21
CDY30748	Canola	endoplasmic reticulum	21.59	12.95
PGSC0003DMT400034503	Potato	cytosol, nucleus	22.73	11.75
PGSC0003DMT400036411	Potato	nucleus	15.91	10.67
PGSC0003DMT400076902	Potato	nucleus	18.18	9.55

Protein Annotations

MapMan:15.5.3.3	Gene3D:3.30.530.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0008289	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M1AZS0
PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400012999	PGSC:PGSC0003DMG400012999	EnsemblPlants:PGSC0003DMT400033830	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF513	SMART:SM00234	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000296DD80
SEG:seg	:	:	:	:	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012999]

Coordinates

chr7:-:38710833..38718384

Molecular Weight (calculated)

39988.3 Da

IEP (calculated)

4.708

GRAVY (calculated)

-0.425

Length

352 amino acids

Sequence
(BLAST)

001: MARSGCAVAY VVVTVENSLV IGNDYEFVPS LVTGDDREII LSSSGLQLGQ SSNMLESQVT PLDIESMTIS EDEIMQLLTD DEANSKSDYN DYKFDEQDDN
101: VDEHPNKKIC NHRHTKQHIE EMEALFKECP KPDEKKMKEL SGKEFRQMEE PLWFPNIDGV KNVFNEKEFP RGNGIKTTAS RESAFVIMNH INLVEIFMDT
201: NHWANLFSSI VLTMDVLSPG VTENLNGSMK MIYAEFQVPS PQIPNRDCYF VRSCKKIDDG LWAIVDVSPD HTPITKCRKS PSGCMIQQIS NDISKVTWIE
301: HIVANDTLIH TIYKAFVNSN LAFGEKRWIA TLHRQCERLA SVEATNSHQN DI

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.