Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19129 | Canola | nucleus | 96.72 | 97.25 |
| CDY12213 | Canola | nucleus | 64.84 | 66.57 |
| CDY48272 | Canola | nucleus | 63.2 | 65.62 |
| CDY30748 | Canola | endoplasmic reticulum | 49.93 | 62.18 |
| AT2G32370.1 | Thale cress | nucleus | 55.13 | 55.59 |
| CDY06167 | Canola | nucleus | 49.79 | 50.56 |
| CDY10041 | Canola | nucleus | 50.07 | 49.0 |
| CDX90879 | Canola | nucleus | 47.61 | 48.6 |
| CDY21319 | Canola | nucleus | 47.47 | 48.46 |
| CDY16639 | Canola | nucleus | 47.74 | 47.61 |
| CDY71572 | Canola | nucleus | 25.58 | 47.58 |
| CDX76399 | Canola | nucleus | 46.37 | 47.41 |
| CDX94586 | Canola | nucleus | 47.47 | 47.4 |
| CDX98703 | Canola | nucleus | 44.73 | 47.05 |
| CDY27417 | Canola | nucleus | 45.69 | 46.78 |
| CDX94054 | Canola | nucleus | 44.46 | 46.76 |
| CDY66622 | Canola | nucleus | 46.51 | 46.51 |
| CDY49515 | Canola | plasma membrane | 50.07 | 45.13 |
| CDX79091 | Canola | nucleus | 45.96 | 45.04 |
| PGSC0003DMT400094124 | Potato | nucleus | 45.55 | 44.05 |
| CDY23096 | Canola | nucleus | 7.93 | 43.94 |
| CDY46842 | Canola | nucleus | 49.66 | 43.73 |
| PGSC0003DMT400048971 | Potato | nucleus | 33.24 | 42.78 |
| Solyc12g005830.1.1 | Tomato | nucleus | 43.37 | 42.21 |
| CDY18903 | Canola | nucleus | 37.76 | 39.15 |
| CDX74762 | Canola | nucleus | 37.89 | 39.12 |
| CDY42097 | Canola | nucleus | 27.5 | 38.88 |
| CDX96744 | Canola | nucleus | 35.16 | 38.19 |
| CDY00515 | Canola | nucleus | 35.02 | 38.04 |
| CDY26204 | Canola | nucleus | 32.97 | 37.83 |
| CDX67855 | Canola | nucleus | 40.36 | 37.82 |
| CDY31916 | Canola | nucleus | 34.61 | 37.59 |
| CDY45684 | Canola | nucleus | 40.22 | 37.5 |
| CDY51143 | Canola | nucleus | 40.22 | 37.22 |
| CDY07201 | Canola | nucleus | 40.08 | 37.18 |
| Solyc07g041850.1.1 | Tomato | nucleus | 34.47 | 37.06 |
| CDX68229 | Canola | nucleus | 35.57 | 36.98 |
| CDY19185 | Canola | nucleus | 34.47 | 36.95 |
| CDX96471 | Canola | nucleus | 36.25 | 36.91 |
| CDX91894 | Canola | nucleus | 39.95 | 36.78 |
| CDX74347 | Canola | nucleus | 39.81 | 36.7 |
| CDY26205 | Canola | nucleus | 34.61 | 36.67 |
| CDX72984 | Canola | nucleus | 35.84 | 36.64 |
| CDX83884 | Canola | nucleus | 34.2 | 36.5 |
| CDY11109 | Canola | nucleus | 34.88 | 35.92 |
| CDX67929 | Canola | nucleus | 36.53 | 34.1 |
| CDX79408 | Canola | nucleus | 36.25 | 33.97 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.14 | 33.52 |
| CDX89415 | Canola | cytosol, mitochondrion | 8.07 | 33.15 |
| CDY39874 | Canola | plasma membrane | 8.48 | 32.29 |
| CDY43458 | Canola | nucleus | 35.29 | 31.77 |
| CDY03177 | Canola | nucleus | 35.57 | 31.48 |
| CDX76559 | Canola | nucleus | 31.33 | 31.2 |
| CDY08866 | Canola | nucleus | 31.33 | 31.11 |
| CDY33492 | Canola | nucleus | 33.24 | 30.53 |
| CDX77711 | Canola | nucleus | 34.2 | 30.38 |
| CDX85461 | Canola | cytosol | 28.45 | 29.5 |
| CDY43137 | Canola | nucleus | 27.09 | 28.74 |
| CDY67945 | Canola | nucleus | 26.95 | 28.59 |
| CDY44946 | Canola | nucleus | 25.31 | 28.55 |
| CDY53691 | Canola | nucleus | 27.5 | 28.31 |
| CDY16938 | Canola | nucleus | 25.44 | 28.18 |
| CDY42301 | Canola | nucleus | 26.54 | 28.12 |
| CDY02713 | Canola | nucleus | 28.18 | 27.88 |
| CDY49937 | Canola | nucleus | 26.13 | 27.52 |
| CDX89416 | Canola | nucleus | 24.21 | 27.27 |
| CDY21211 | Canola | nucleus | 25.72 | 27.09 |
| CDY62389 | Canola | cytosol | 18.06 | 26.99 |
| CDY69499 | Canola | cytosol | 11.22 | 26.97 |
| CDX94443 | Canola | cytosol | 23.12 | 26.91 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078FR31 | UniProt:A0A078FR31 | EnsemblPlants:CDY15339 | ProteinID:CDY15339 |
| ProteinID:CDY15339.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00085621001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF320 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI0004EEC234 | SEG:seg | : | : | : | : |
Description
BnaC04g42840DBnaC04g42840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR31]
Coordinates
chrLK032054:-:120158..125451
Molecular Weight (calculated)
81678.3 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.456
Length
731 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPNMVPVE MNNNIGDGDN NNNNNNNNNG NNTTTTNNDI NGGIVLGDEE IDSANTSENQ EDGSDHQDPA RPSKRKRYHR HTKHQIQEME NFFKECPHPD
101: DTQRKELSRQ LGLDHHQIKF WFQNKRTQIK NHQERHENSQ LRAENDRLRA ENHQCRASIA KAICHRCGGK TAIGEMSFEE HHLLLENTKL AEEIRQLSLV
201: MPKCTGKPVM NYTLTPPVPA RPSEEIASNR REVYGSIGNL PGSALRVKDV DKPLIIELAE LAMKELMAMA RLDEPLWDIG ANGTSLALNL NEHTRIFRNG
301: LGPILNGLRT EASKATSIAF MNHLDIVQSL MDVNLWSNMF ARMVARAMSH DAILTGVQGN FDGAFHLMTA EYQVLSPVVS TRECYFVRYC KQQGDGIWAV
401: VDVSIDHLFP NLELKCRRRP SGCLIQQIEN GFCKVTWVEH VEVDDREVHP LYKSLISSGQ ALSAERWVET LERQCERLAY IMSPNVPSIE PDGLIMITNN
501: AKQSLLKIAE RMTRSFLSGV ATSNGDIWFR LSGNGGNTVR AMTRKSLNDP GRPVGVILYA STSFWLLVPP KTVFDFLRDA KNRTNWDVIT TGGEDLQLMS
601: QIGNGRDSRN CVSLLRTPNT SQKKMMMIQE TSTDPTASFV IYAPLDVTLT ENVLMGGDPG NVSLLPMGFA ILPDGTAQPG REGGSLVSAA FQVLAEKDPS
701: ARLSFSSLAT TENLILKTAH KIRAYFSQQT V
101: DTQRKELSRQ LGLDHHQIKF WFQNKRTQIK NHQERHENSQ LRAENDRLRA ENHQCRASIA KAICHRCGGK TAIGEMSFEE HHLLLENTKL AEEIRQLSLV
201: MPKCTGKPVM NYTLTPPVPA RPSEEIASNR REVYGSIGNL PGSALRVKDV DKPLIIELAE LAMKELMAMA RLDEPLWDIG ANGTSLALNL NEHTRIFRNG
301: LGPILNGLRT EASKATSIAF MNHLDIVQSL MDVNLWSNMF ARMVARAMSH DAILTGVQGN FDGAFHLMTA EYQVLSPVVS TRECYFVRYC KQQGDGIWAV
401: VDVSIDHLFP NLELKCRRRP SGCLIQQIEN GFCKVTWVEH VEVDDREVHP LYKSLISSGQ ALSAERWVET LERQCERLAY IMSPNVPSIE PDGLIMITNN
501: AKQSLLKIAE RMTRSFLSGV ATSNGDIWFR LSGNGGNTVR AMTRKSLNDP GRPVGVILYA STSFWLLVPP KTVFDFLRDA KNRTNWDVIT TGGEDLQLMS
601: QIGNGRDSRN CVSLLRTPNT SQKKMMMIQE TSTDPTASFV IYAPLDVTLT ENVLMGGDPG NVSLLPMGFA ILPDGTAQPG REGGSLVSAA FQVLAEKDPS
701: ARLSFSSLAT TENLILKTAH KIRAYFSQQT V
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.