CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024984.1-P	Field mustard	nucleus	98.74	98.87
CDX77711	Canola	nucleus	96.36	93.2
CDY03177	Canola	nucleus	86.06	82.93
AT5G46880.3	Thale cress	nucleus	86.06	82.93
CDY43458	Canola	nucleus	84.05	82.39
CDY08866	Canola	nucleus	53.89	58.29
VIT_02s0012g02030.t01	Wine grape	nucleus	58.04	57.89
CDX76559	Canola	nucleus	53.02	57.49
KRH74360	Soybean	nucleus	54.77	55.26
KRH39579	Soybean	nucleus	55.28	55.0
PGSC0003DMT400006155	Potato	nucleus	51.51	53.66
GSMUA_Achr5P14100_001	Banana	nucleus	49.37	51.98
Solyc08g076370.2.1	Tomato	nucleus	54.9	51.9
GSMUA_Achr4P19010_001	Banana	nucleus	50.5	50.19
TraesCS1A01G193400.1	Wheat	nucleus, plastid	50.38	45.93
TraesCS1D01G197300.1	Wheat	nucleus	50.5	45.53
HORVU1Hr1G050620.2	Barley	nucleus	50.25	45.2
Os10t0575600-01	Rice	nucleus	50.0	45.12
TraesCS1B01G208400.1	Wheat	nucleus	50.38	45.06
CDY23096	Canola	nucleus	7.41	44.7
KXG38837	Sorghum	nucleus	49.5	44.67
Zm00001d030069_P004	Maize	nucleus	48.99	44.12
CDY71572	Canola	nucleus	21.48	43.51
CDX96744	Canola	nucleus	35.3	41.75
CDY11109	Canola	nucleus	37.19	41.69
CDX68229	Canola	nucleus	36.81	41.68
CDY21319	Canola	nucleus	37.44	41.62
CDY26204	Canola	nucleus	33.29	41.6
CDX90879	Canola	nucleus	37.31	41.48
CDY16639	Canola	nucleus	38.07	41.34
CDX76399	Canola	nucleus	36.93	41.12
CDY27417	Canola	nucleus	36.81	41.04
CDX94586	Canola	nucleus	37.69	40.98
CDX96471	Canola	nucleus	36.93	40.95
CDX83884	Canola	nucleus	35.18	40.88
CDX72984	Canola	nucleus	36.68	40.84
CDY06167	Canola	nucleus	36.93	40.83
CDY19185	Canola	nucleus	34.8	40.62
CDY26205	Canola	nucleus	35.05	40.43
CDX98703	Canola	nucleus	35.3	40.43
CDY42097	Canola	nucleus	26.13	40.23
CDX94054	Canola	nucleus	35.05	40.14
CDY66622	Canola	nucleus	36.81	40.08
CDY10041	Canola	nucleus	37.31	39.76
CDX79091	Canola	nucleus	36.93	39.41
CDX74762	Canola	nucleus	32.91	37.01
CDY49515	Canola	plasma membrane	37.31	36.62
CDY18903	Canola	nucleus	32.29	36.45
CDY46842	Canola	nucleus	37.69	36.14
CDY51143	Canola	nucleus	35.8	36.08
CDX74347	Canola	nucleus	35.68	35.81
CDY07201	Canola	nucleus	35.43	35.79
CDX91894	Canola	nucleus	35.68	35.77
CDX67855	Canola	nucleus	34.42	35.13
CDY00515	Canola	nucleus	29.52	34.92
CDY31916	Canola	nucleus	29.52	34.92
CDY45684	Canola	nucleus	34.3	34.82
CDY48272	Canola	nucleus	30.65	34.66
CDY12213	Canola	nucleus	30.78	34.41
CDY19129	Canola	nucleus	30.65	33.56
CDY15339	Canola	nucleus	30.53	33.24
CDY30748	Canola	endoplasmic reticulum	24.25	32.88
CDY39874	Canola	plasma membrane	7.91	32.81
CDX85461	Canola	cytosol	27.26	30.78
CDX67929	Canola	nucleus	30.15	30.65
CDX79408	Canola	nucleus	30.03	30.64
CDY67945	Canola	nucleus	26.51	30.62
CDY44946	Canola	nucleus	24.62	30.25
CDY43137	Canola	nucleus	26.13	30.19
CDY42301	Canola	nucleus	26.13	30.14
CDY53691	Canola	nucleus	26.88	30.14
CDY62389	Canola	cytosol	18.34	29.86
CDX89415	Canola	cytosol, mitochondrion	6.66	29.78
CDY16938	Canola	nucleus	24.62	29.7
CDY02713	Canola	nucleus	27.01	29.09
CDY49937	Canola	nucleus	23.62	27.09
CDY21211	Canola	nucleus	22.99	26.37
CDX89416	Canola	nucleus	20.98	25.73
CDY69499	Canola	cytosol	9.8	25.66
CDX94443	Canola	cytosol	19.85	25.16

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	GO:A0A078H7S3	UniProt:A0A078H7S3	EnsemblPlants:CDY33492	ProteinID:CDY33492
ProteinID:CDY33492.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00054740001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom
UniParc:UPI0004EF4BF4	SEG:seg	:	:	:	:

Description

BnaA06g35810DBnaA06g35810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7S3]

Coordinates

chrLK032315:+:266901..271026

Molecular Weight (calculated)

88564.4 Da

IEP (calculated)

5.647

GRAVY (calculated)

-0.397

Length

796 amino acids

Sequence
(BLAST)

001: MLTMGEENVM TTDNRFASPQ PPSSSPATIQ NPNFNFNPFN SFSSVIPKEE HGMMSMSMLM MMGDGGVEEM MENGSAGGSF GSGSEQAEDP KSGNEFDVAE
101: LQDEEQPPPA KKKRYHRHTN RQIEEMEALF KQNPHPDDKQ RQRLSHELGL KPRQVKFWFQ NRRTQMKAQQ DRAENVMLRA DNDNLKAENS HLQAELRCLS
201: CPSCGGPTVL GDIPFNELHI ENCRLREELD RLSSIASRYT GRPMEPSQPM INPPLEVQHH QPSLELDMSV YAGNFQEQPC SDMMLLPPQD TACYLQVQTN
301: NNSNGNNMVL ADEEKVIAME IAVSCVQELT KMCNTEEPLW IKKKSDKMGG EVLCLNEEEY KRLFPWPMEN HNNKGDFRRE ASKANAVVIM NSITLVDAFL
401: NADKWSEMFC SIVARAKTVQ IISSGVSGAS GSLLLMYAEL QVLSPLVPTR EAYFLRYVEQ NAENGNWAIV DFPIDQIQPL SANTPHEYKR KPSGCIIQDM
501: PNGYSQVKWV EHVEVNERHV HEIFAEYVKS GIAFGASLIP SAEGRRNMMR LSQRMMKTFC VNISTSYGQS WTALSETTKD TVRITTRKMC EPGQPTGVVL
601: AAVSTTWLPF SHAKVFDLLR HQHHHSLLEV LFSGSSPHEV AHIANGSHPG NCISLLRINV SSNSWHNVEL MLQENCIDNS GSLIVYSSVD VDSIKHAMNG
701: KDPSGIPLLP LGFSVVPVNY PDQVEGVSVN SHPLPSCLLT VGIQVLASNV PTAKPNLSTV TTINNHLCSI VNQITSVLSS TLPPAGDDAV AKQEVI

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.