Factsheet for HORVU1Hr1G050620.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G069400.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	HORVU2Hr1G069400.8	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G193400.1	Wheat	nucleus, plastid	96.38	97.71
TraesCS1D01G197300.1	Wheat	nucleus	97.29	97.51
TraesCS1B01G208400.1	Wheat	nucleus	97.4	96.85
Os10t0575600-01	Rice	nucleus	80.11	80.39
KXG38837	Sorghum	nucleus	79.44	79.71
Zm00001d030069_P004	Maize	nucleus	78.42	78.51
GSMUA_Achr5P14100_001	Banana	nucleus	56.5	66.14
GSMUA_Achr4P19010_001	Banana	nucleus	57.06	63.05
VIT_02s0012g02030.t01	Wine grape	nucleus	56.05	62.16
KRH74360	Soybean	nucleus	52.66	59.06
KRH39579	Soybean	nucleus	52.77	58.38
PGSC0003DMT400006155	Potato	nucleus	49.15	56.94
Solyc08g076370.2.1	Tomato	nucleus	52.77	55.46
HORVU7Hr1G103010.2	Barley	cytosol, mitochondrion, nucleus	7.91	54.26
AT5G46880.3	Thale cress	nucleus	48.25	51.69
CDY43458	Canola	nucleus	46.67	50.86
Bra017519.1-P	Field mustard	nucleus	46.89	50.86
CDY03177	Canola	nucleus	47.34	50.73
Bra024984.1-P	Field mustard	nucleus	45.2	50.31
CDY33492	Canola	nucleus	45.2	50.25
CDX77711	Canola	nucleus	46.33	49.82
AT4G17710.1	Thale cress	nucleus	39.89	49.79
CDY08866	Canola	nucleus	39.77	47.83
CDX76559	Canola	nucleus	39.44	47.55
Bra021035.1-P	Field mustard	nucleus	39.44	47.55
HORVU0Hr1G006920.1	Barley	nucleus	5.31	47.47
HORVU2Hr1G106970.2	Barley	nucleus, plastid	37.18	42.34
HORVU7Hr1G103020.1	Barley	nucleus	9.6	42.29
HORVU6Hr1G079410.6	Barley	nucleus	34.24	41.79
HORVU7Hr1G073440.1	Barley	nucleus	37.06	41.21
HORVU7Hr1G073450.1	Barley	mitochondrion, nucleus	36.16	40.2
HORVU7Hr1G035250.1	Barley	nucleus	6.44	38.26
HORVU6Hr1G065300.3	Barley	nucleus	34.46	38.12
HORVU3Hr1G073290.1	Barley	nucleus	25.99	35.06
HORVU5Hr1G080700.2	Barley	nucleus	33.67	34.94
HORVU0Hr1G013510.1	Barley	cytosol	5.42	34.53
HORVU7Hr1G035230.2	Barley	nucleus	28.7	34.14
HORVU2Hr1G095210.1	Barley	nucleus	30.06	34.1
HORVU1Hr1G005430.1	Barley	nucleus	7.46	30.28
HORVU4Hr1G062510.2	Barley	cytosol	8.93	28.52
HORVU3Hr1G022070.1	Barley	nucleus	5.99	28.04
HORVU3Hr1G077690.1	Barley	nucleus	20.0	26.38
HORVU7Hr1G036950.2	Barley	cytosol	5.2	25.14
HORVU3Hr1G108430.1	Barley	cytosol	9.38	24.92
HORVU5Hr1G083940.3	Barley	nucleus	21.58	24.61
HORVU3Hr1G022160.1	Barley	cytosol	2.49	20.0
HORVU3Hr1G022170.1	Barley	cytosol	2.6	19.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A287FII5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU1Hr1G050620	EnsemblPlants:HORVU1Hr1G050620.2	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000B475D2B	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:-:375618306..375624188

Molecular Weight (calculated)

95396.0 Da

IEP (calculated)

5.897

GRAVY (calculated)

-0.271

Length

885 amino acids

Sequence
(BLAST)

001: MFGDCQVLSS MAAMAAGGSS ADALFASPLM PNPGALAGFM SSSSAMPFHH HFSTNLIPKE EGVMGGLHMA KDEELDLDME MELSGGSGSG HLDGLLSFAD
101: VDDDRDQKPQ HSEPDGAGAG HHPSSSAAAA ASNGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD
201: NVILRAENES LKTDNYRLQA AIRNVVCPSC GQAAVIGDMS YEEQNLRIEN ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN
301: VYSRHFVEQQ HGAMDLMALQ QQMASGAHGI AATASYLQGP MTPVVVQEQD KQLVMELAST AADHLIKMCR TSEPLWARRR GAGSSSGEVM DAEEHARMLS
401: WPIDSGKQQQ TDVAHAARTE GTRDCAVVIM NSITLVDAFL DANKWMELFP SIVCKARTIQ VIHHGAASGH LGSGSLILMQ AEVQFLSPLV PAREVVFFRY
501: CVHNADEGTW SIVDFPADGF QEELLQQQQQ QASSLVRCRR RPSGCIIQDA PNGYSRVVWV EHMEVVGEEK PLQPVFKDHV AGGAAFGATR WVSVLQRQCE
601: RLASELARSI ADQGVIRTPE ARTNMMKLSQ RMITAFCANI SASGSQSWTA LSDSTEDTVR ITTRKNTEPG QPSGVILTAV STSWLPFSHQ QVFELLADEQ
701: QRCQQLEIMS NGGSLHEVAH IANGSHPRNC ISLLRINSAS NSSQNVELLL QESSIHPDGG SLVVFATVDV DAIQVTMSGE DPSYIPLLPM GFAIFPATSP
801: SPGATSSDTT GNGESSPGNA DEPATGCLLT VGMQVLASAV PSAKLNLSSV TAINSHICNT IHQITTALKG AGGSRTEPAP ACSDQ

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.