Factsheet for HORVU7Hr1G103010.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G103020.1	Barley	nucleus	100.0	64.18
HORVU7Hr1G035250.1	Barley	nucleus	51.94	44.97
HORVU0Hr1G006920.1	Barley	nucleus	26.36	34.34
HORVU3Hr1G022070.1	Barley	nucleus	36.43	24.87
HORVU1Hr1G005430.1	Barley	nucleus	36.43	21.56
HORVU3Hr1G022160.1	Barley	cytosol	12.4	14.55
HORVU3Hr1G022170.1	Barley	cytosol	12.4	13.45
HORVU7Hr1G035230.2	Barley	nucleus	69.77	12.1
HORVU6Hr1G079410.6	Barley	nucleus	64.34	11.45
HORVU2Hr1G106970.2	Barley	nucleus, plastid	55.04	9.14
HORVU7Hr1G073440.1	Barley	nucleus	55.81	9.05
HORVU7Hr1G073450.1	Barley	mitochondrion, nucleus	55.81	9.05
HORVU3Hr1G073290.1	Barley	nucleus	44.19	8.69
HORVU6Hr1G065300.3	Barley	nucleus	51.94	8.38
HORVU5Hr1G080700.2	Barley	nucleus	53.49	8.09
HORVU1Hr1G050620.2	Barley	nucleus	54.26	7.91
HORVU2Hr1G095210.1	Barley	nucleus	47.29	7.82
HORVU3Hr1G077690.1	Barley	nucleus	35.66	6.86
HORVU5Hr1G083940.3	Barley	nucleus	36.43	6.06
HORVU3Hr1G108430.1	Barley	cytosol	11.63	4.5
HORVU7Hr1G036950.2	Barley	cytosol	3.1	2.19
HORVU4Hr1G062510.2	Barley	cytosol	0.0	0.0
HORVU0Hr1G013510.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU7Hr1G103010.2	EnsemblPlantsGene:HORVU7Hr1G103010	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF490	PFAM:PF00046	PFscan:PS50071
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000B475CFC	UniProt:A0A287XM73	MapMan:15.5.3.3	:

Description

No Description!

Coordinates

chrchr7H:-:612774614..612775421

Molecular Weight (calculated)

15118.6 Da

IEP (calculated)

6.259

GRAVY (calculated)

-1.223

Length

129 amino acids

Sequence
(BLAST)

001: MDSGDDQQLQ EQGQKNYHRH TPSQIQALEA AFMQCSHPDE TQRAMLGRDL GLEPRKVKYW FQNRRTQKKV QQERQGNDFL RAENDRIRCE NIALRDALQN
101: AVCPSCGPPV AEDYYDEQQL RVENARLKE

Best Arabidopsis Sequence Match ( AT1G17920.1 )
(BLAST)

001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA

Arabidopsis Description

HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.