Factsheet for HORVU5Hr1G083940.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G335900.1	Wheat	nucleus	74.74	77.03
TraesCS5B01G330300.1	Wheat	nucleus	74.1	76.56
TraesCS5A01G330200.1	Wheat	nucleus	72.04	75.13
Zm00001d019477_P001	Maize	nucleus	36.86	38.86
EER98409	Sorghum	nucleus	34.41	36.58
HORVU7Hr1G103010.2	Barley	cytosol, mitochondrion, nucleus	6.06	36.43
Zm00001d004234_P001	Maize	nucleus	33.12	36.35
OQU81266	Sorghum	nucleus	34.79	35.11
HORVU0Hr1G013510.1	Barley	cytosol	6.06	33.81
OQU81174	Sorghum	nucleus	32.09	33.74
HORVU5Hr1G080700.2	Barley	nucleus	34.79	31.65
HORVU0Hr1G006920.1	Barley	nucleus	3.99	31.31
HORVU6Hr1G065300.3	Barley	nucleus	31.7	30.75
Zm00001d004230_P030	Maize	nucleus	31.83	30.34
HORVU7Hr1G035250.1	Barley	nucleus	5.8	30.2
HORVU3Hr1G022070.1	Barley	nucleus	7.35	30.16
HORVU7Hr1G103020.1	Barley	nucleus	7.6	29.35
HORVU2Hr1G095210.1	Barley	nucleus	29.38	29.23
HORVU2Hr1G106970.2	Barley	nucleus, plastid	28.99	28.96
HORVU6Hr1G079410.6	Barley	nucleus	26.68	28.55
HORVU1Hr1G005430.1	Barley	nucleus	7.99	28.44
HORVU7Hr1G073440.1	Barley	nucleus	29.12	28.39
HORVU4Hr1G062510.2	Barley	cytosol	10.05	28.16
HORVU7Hr1G073450.1	Barley	mitochondrion, nucleus	28.09	27.39
HORVU3Hr1G077690.1	Barley	nucleus	23.58	27.27
HORVU7Hr1G036950.2	Barley	cytosol	6.31	26.78
Os08t0292000-01	Rice	nucleus	26.8	26.3
HORVU3Hr1G073290.1	Barley	nucleus	21.78	25.76
HORVU7Hr1G035230.2	Barley	nucleus	22.29	23.25
HORVU3Hr1G108430.1	Barley	cytosol	9.54	22.22
HORVU1Hr1G050620.2	Barley	nucleus	24.61	21.58
HORVU3Hr1G022160.1	Barley	cytosol	2.32	16.36
HORVU3Hr1G022170.1	Barley	cytosol	2.45	15.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A287S1X1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU5Hr1G083940	EnsemblPlants:HORVU5Hr1G083940.3	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF484	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000B4764B3	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:+:570739960..570745312

Molecular Weight (calculated)

83770.0 Da

IEP (calculated)

5.631

GRAVY (calculated)

-0.283

Length

776 amino acids

Sequence
(BLAST)

001: MDGDWLEENS DLYNWLVLGF ASGDNQVIQH DLGAETDGLL GDATNVSNTH AAAADQENGG GQTNGDQRAR TRHFRRRHTA EQILILEAAF EGYQHPDEKR
101: RLELSRRTGL SAAQVQIWFQ NRRNTGKNKA QKKETEEYQE ENGRLQAEQQ ALISAMQNKI CIPCRGEGTP EWHRLYAEHV RLKDEQMRIA AFLNSVSGGR
201: LQVINHTVVD TGNASAATDH DAVPPPSHHA PLTVTDPNPV MFPDEGIAGD DDETAGRTLL LQHVVCALEE LKVLVGLDAP LWSTPQGGEV EVINYREYLE
301: TMFPGMYERY EMDFCADATR KTGIISCTAT DLVGILMDAE WWSQTFPGIV ASATTSKIIT PGDSGHGLAQ LMTAELRVLS PLVPVRKINF IRHCQRLEEN
401: TWAVVDVSVD GILEQDGGQA AALDDGAPST HTACKLLPSG CRIQELENGY CQVTWIVNMV HDEATVPPLH HPLFRSGWAL GASRWLASLQ RRCEYIAFLH
501: SSSNPTRSLN NRXXXXXXXX KSVLEAAHRM TLRFYEAICG PAALPWRSVN ECRGRCGIGA ERFEVVVRVV TSPVGGDATV LRATTTVWLP GTPPQLVFDY
601: LCDGDRRTEW DIVANGAPIR REGYFHTGQL HGNAVSLLRT IASNGATNKL ILEESCVDAS CMVLAYAPID EQSMKDVMDG THTPFSLLPS GVVVLPDGHA
701: EPGPGGSPAS AMCSSSSSTG HKRNSGSLVS TMYQTLLSGH PPERLSKAVA GNVGKLLCDA IDKIKSAVHA DVVLAA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.