Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G330300.1 | Wheat | nucleus | 93.76 | 94.01 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 89.11 | 90.19 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 77.03 | 74.74 |
| Zm00001d019477_P001 | Maize | nucleus | 36.79 | 37.64 |
| EER98409 | Sorghum | nucleus | 35.19 | 36.3 |
| OQU81266 | Sorghum | nucleus | 36.26 | 35.5 |
| Zm00001d004234_P001 | Maize | nucleus | 32.8 | 34.94 |
| OQU81174 | Sorghum | nucleus | 33.73 | 34.42 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 6.64 | 33.56 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 35.72 | 33.42 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 9.43 | 33.33 |
| TraesCS4D01G228800.1 | Wheat | nucleus | 9.16 | 32.24 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 6.37 | 32.21 |
| TraesCS3D01G121300.1 | Wheat | nucleus | 8.9 | 32.21 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 34.53 | 30.62 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 27.36 | 30.07 |
| Zm00001d004230_P030 | Maize | nucleus | 31.47 | 29.12 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 31.08 | 29.1 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 29.48 | 28.61 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 29.88 | 28.27 |
| TraesCS3D01G121500.1 | Wheat | nucleus | 8.37 | 28.25 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 28.55 | 27.42 |
| Os08t0292000-01 | Rice | nucleus | 28.02 | 26.68 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 25.37 | 26.09 |
| TraesCS7D01G217200.1 | Wheat | nucleus | 7.7 | 26.01 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 25.76 | 24.43 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 21.65 | 23.87 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 25.76 | 21.97 |
| TraesCS3D01G121400.1 | Wheat | golgi, nucleus | 9.56 | 18.56 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS5D01G335900 | EnsemblPlants:TraesCS5D01G335900.1 | TIGR:cd00086 | TIGR:cd08875 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:425465587..425471148
Molecular Weight (calculated)
82058.4 Da
IEP (calculated)
6.118
GRAVY (calculated)
-0.277
Length
753 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEWPEQFN DLYNWLVLGY PGGDNQVIQQ NLGAEVNGLP GAAANMGNNT NAAAADQGNG GGQANGDQRT RHFRRRHNVE QIQILEAAFK EGHHPDEKRR
101: LELSRRTGLS PTQVQIWFQN RRNSGKSKAQ KKETEEFQEE NDRLQAEKQA LMSAMQNKIC FICRGEDTPE RQRLYAENVM LKDAHMRIAD FLKSVSGGRL
201: QVINHTVVDT HAPLTLTAPN PVMIPDEGVA RDNPETGGDT LVIQHVACAM EEFKVLVGLG APLWSLAEGG EVEVIDYKEY MKMMFPNERH EMEFCAEATR
301: KTGIISCTAT DLVGILMNAD WWSQTFPGIV ASATTSKIIT PGDSGDGLVQ LMSAELRVLS PRVPVRKINF IRRCQKIAEN IWAVVDVSVD GIRDQAAGLN
401: DGAPSTYTAC RLQPSGCHIQ ELNNGHCQVT WIVNMVHDEA TVPPLHHPLF RSGWALGACR WIASLQRRCD YIASLHTNPV LTLNTRSGGA APITPEGRKS
501: VLEVAHRMTL KFYEAICGPG TQPWTSVDER RGSCGVGAER FEVDVRVVTF PVGTGATVLR ATTTVWLPGT PAQQVFNYLC DGDRRTEWDI GANRTSTIRQ
601: EGCFGTGQLD GNSVSLLRTI ASNGAYGKLI LQESCIDASC MVLAYAQIDD QTIQDVINGT NTSFSLLPSG VVVLPDGNAE PGAPPTSAMC SSSSSASHRS
701: NSGSLVSIMY QTLLSGQPPE HLFKAVAENV GNLLCQAIDK IKSGVHANVV LAA
101: LELSRRTGLS PTQVQIWFQN RRNSGKSKAQ KKETEEFQEE NDRLQAEKQA LMSAMQNKIC FICRGEDTPE RQRLYAENVM LKDAHMRIAD FLKSVSGGRL
201: QVINHTVVDT HAPLTLTAPN PVMIPDEGVA RDNPETGGDT LVIQHVACAM EEFKVLVGLG APLWSLAEGG EVEVIDYKEY MKMMFPNERH EMEFCAEATR
301: KTGIISCTAT DLVGILMNAD WWSQTFPGIV ASATTSKIIT PGDSGDGLVQ LMSAELRVLS PRVPVRKINF IRRCQKIAEN IWAVVDVSVD GIRDQAAGLN
401: DGAPSTYTAC RLQPSGCHIQ ELNNGHCQVT WIVNMVHDEA TVPPLHHPLF RSGWALGACR WIASLQRRCD YIASLHTNPV LTLNTRSGGA APITPEGRKS
501: VLEVAHRMTL KFYEAICGPG TQPWTSVDER RGSCGVGAER FEVDVRVVTF PVGTGATVLR ATTTVWLPGT PAQQVFNYLC DGDRRTEWDI GANRTSTIRQ
601: EGCFGTGQLD GNSVSLLRTI ASNGAYGKLI LQESCIDASC MVLAYAQIDD QTIQDVINGT NTSFSLLPSG VVVLPDGNAE PGAPPTSAMC SSSSSASHRS
701: NSGSLVSIMY QTLLSGQPPE HLFKAVAENV GNLLCQAIDK IKSGVHANVV LAA
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.