Factsheet for TraesCS3D01G121500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G138600.1	Wheat	nucleus	85.2	88.37
TraesCS3B01G138800.1	Wheat	nucleus	71.75	84.66
TraesCS4D01G228800.1	Wheat	nucleus	61.44	64.02
TraesCS3D01G121300.1	Wheat	nucleus	58.74	62.98
TraesCS1D01G037100.1	Wheat	nucleus	58.74	61.5
TraesCS7D01G217200.1	Wheat	nucleus	51.57	51.57
TraesCS3D01G121400.1	Wheat	golgi, nucleus	60.09	34.54
TraesCS7D01G169000.1	Wheat	nucleus	18.39	27.52
TraesCS7D01G168900.1	Wheat	nucleus	17.94	26.85
TraesCS6D01G237000.1	Wheat	nucleus	31.84	8.83
TraesCS6D01G304300.1	Wheat	nucleus	26.01	8.47
TraesCS2D01G473700.1	Wheat	nucleus	29.15	8.38
TraesCS5D01G335900.1	Wheat	nucleus	28.25	8.37
TraesCS7D01G168700.1	Wheat	nucleus	26.46	8.06
TraesCS7D01G305200.1	Wheat	nucleus	28.7	8.04
TraesCS5D01G320600.1	Wheat	nucleus	30.49	8.01
TraesCS4D01G082600.1	Wheat	nucleus	28.25	7.83
TraesCS2D01G398600.1	Wheat	nucleus	24.66	7.02
TraesCS1D01G197300.1	Wheat	nucleus	26.46	6.68
TraesCS3D01G319200.1	Wheat	nucleus	18.83	6.15
TraesCS3D01G296500.3	Wheat	nucleus	19.73	5.54
Solyc11g022410.1.1	Tomato	extracellular	0.45	1.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF00046
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS3D01G121500	EnsemblPlants:TraesCS3D01G121500.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:78943960..78945322

Molecular Weight (calculated)

25702.1 Da

IEP (calculated)

6.514

GRAVY (calculated)

-1.035

Length

223 amino acids

Sequence
(BLAST)

001: MDGELPEYDS DVQNMLDLFI TSEQGHLLQH EKGDEMHGLL GATTNMGNTD DANAAAADEG NNNDGETNSV QRMMTRHANY NRLRGEQIQQ LEAYNTYSIN
101: ESPYPDAKLR KDLSERLGMS ALQVKFWFQN KRSSSKGKRQ LQDTKNLQGD NQMLKHENQA IKWVVEHKTC LKCAGVMLKT QDTSEHQRLC TENMRLKEEL
201: RRATAYLKDG LYRNGMWHQF TRD

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.