Factsheet for TraesCS1D01G197300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS6A01G324500.1
TraesCS6B01G354900.3
TraesCS6D01G304300.1
TraesCS7A01G134600.1
TraesCS7A01G167900.1
TraesCS7B01G035800.1
TraesCS7B01G072700.1
TraesCS7D01G134000.1
TraesCS7D01G168700.1
TraesCSU01G150000.1
TraesCSU01G244000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	TraesCS6A01G324500.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS6B01G354900.3	AT1G73360.1	21798944
AT4G17710.1	TraesCS6D01G304300.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS7A01G167900.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS7B01G072700.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS7D01G168700.1	AT1G73360.1	21798944
AT4G17710.1	TraesCSU01G150000.1	AT1G73360.1	21798944
AT4G17710.1	TraesCSU01G244000.1	AT1G73360.1	21798944
AT4G17710.1	TraesCS2A01G282200.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS2B01G299400.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS2D01G281000.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS7A01G134600.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS7B01G035800.1	AT3G11590.1	21798944
AT4G17710.1	TraesCS7D01G134000.1	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G193400.1	Wheat	nucleus, plastid	97.4	98.51
TraesCS1B01G208400.1	Wheat	nucleus	98.64	97.87
HORVU1Hr1G050620.2	Barley	nucleus	97.51	97.29
Os10t0575600-01	Rice	nucleus	80.52	80.61
KXG38837	Sorghum	nucleus	79.5	79.59
Zm00001d030069_P004	Maize	nucleus	78.14	78.05
GSMUA_Achr5P14100_001	Banana	nucleus	56.74	66.27
GSMUA_Achr4P19010_001	Banana	nucleus	57.53	63.42
VIT_02s0012g02030.t01	Wine grape	nucleus	56.51	62.53
KRH74360	Soybean	nucleus	52.89	59.19
KRH39579	Soybean	nucleus	53.0	58.5
PGSC0003DMT400006155	Potato	nucleus	49.72	57.46
Solyc08g076370.2.1	Tomato	nucleus	53.34	55.94
AT5G46880.3	Thale cress	nucleus	48.47	51.82
CDY43458	Canola	nucleus	46.89	50.99
Bra017519.1-P	Field mustard	nucleus	47.11	50.98
CDY03177	Canola	nucleus	47.57	50.85
Bra024984.1-P	Field mustard	nucleus	45.53	50.57
CDY33492	Canola	nucleus	45.53	50.5
CDX77711	Canola	nucleus	46.66	50.06
AT4G17710.1	Thale cress	nucleus	39.98	49.79
CDY08866	Canola	nucleus	39.86	47.83
CDX76559	Canola	nucleus	39.3	47.28
Bra021035.1-P	Field mustard	nucleus	39.3	47.28
TraesCS6D01G304300.1	Wheat	nucleus	35.11	45.26
TraesCS2D01G473700.1	Wheat	nucleus	37.15	42.27
TraesCS7D01G305200.1	Wheat	nucleus	37.03	41.08
TraesCS7D01G168700.1	Wheat	nucleus	32.62	39.34
TraesCS6D01G237000.1	Wheat	nucleus	34.54	37.94
TraesCS7D01G169000.1	Wheat	nucleus	6.34	37.58
TraesCS7D01G168900.1	Wheat	nucleus	6.23	36.91
TraesCS5D01G320600.1	Wheat	nucleus	33.75	35.1
TraesCS2D01G398600.1	Wheat	nucleus	30.46	34.31
TraesCS1D01G037100.1	Wheat	nucleus	7.7	31.92
TraesCS4D01G228800.1	Wheat	nucleus	7.7	31.78
TraesCS3D01G296500.3	Wheat	nucleus	26.84	29.85
TraesCS3D01G121300.1	Wheat	nucleus	7.02	29.81
TraesCS7D01G217200.1	Wheat	nucleus	7.02	27.8
TraesCS3D01G121500.1	Wheat	nucleus	6.68	26.46
TraesCS3D01G319200.1	Wheat	nucleus	20.27	26.21
TraesCS5D01G335900.1	Wheat	nucleus	21.97	25.76
TraesCS4D01G082600.1	Wheat	nucleus	22.65	24.84
TraesCS3D01G121400.1	Wheat	golgi, nucleus	7.25	16.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS1D01G197300	EnsemblPlants:TraesCS1D01G197300.1	TIGR:cd00086	TIGR:cd08875
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:278105002..278110971

Molecular Weight (calculated)

95096.6 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.279

Length

883 amino acids

Sequence
(BLAST)

001: MFGDCQVLSS MAAMAAGSSS ADALFASPLM PNPGALAGFM SNSSAMPFHH HFSTNLIPKE EGVMGGLHMA KDEELDLDME MELSGGSGSG HLDGLLSFAD
101: VDDDRDQKPQ HSEPDGAGAG HHPSSSAAAA ASNGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD
201: NVILRAENES LKTDNYRLQA AIRNVVCPSC GHAAVIGDMS YEEQNLRIEN ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN
301: VYSRHFAEQQ HGAMDLMALP QQMAAGGHGV AATASYLQGP MTPVVVQEQD KQLVMELAST AADHLSKMCR TSEPLWARRR GAGPSSGEVM DAEEHVRMLS
401: WPIDSGKQQQ ADVAHAARTE GTRDSAVVIM NSITLVDAFL DANKWMELFP SIVCKARTIQ VIHHGAASGH LSSGSLILMQ AEMQFLSPLV PAREVVFFRY
501: CVHNADEGTW SIVDFPADGF QEELLQQQQQ TSSLVRCRRR PSGCIIQDAP NGYSRVVWVE HMEVVGEEKP LQPVFKDHVA GGAAFGATRW VSVLQRQCER
601: LASELARSIA DQGVIRTPEA RTNMMKLSQR MITAFCANIS ASGSQSWTAL SDSTDDTVRI TTRKNTEPGQ PSGVILTAVS TSWLPFSHQQ VFELLADEQQ
701: RCQLEILSNG GSLHEVAHIA NGSHPRNCIS LLRINSASNS SQNVELLLQE SSIHPDGGSL VVFATVDVDA IQVTMSGEDP SYIPLLPMGF AIFPATSPSP
801: GATSSDTTSN GETSPGNADE PATGCLLTVG MQVLASAVPS AKLNLSSVTA INSHICNTIH QITTALKGAG GGRTEPAPAG SDQ

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.