Factsheet for Bra021035.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001412.1-P
Bra003846.1-P
Bra007562.1-P
Bra015996.1-P
Bra034827.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	Bra003846.1-P	AT1G73360.1	21798944
AT4G17710.1	Bra007562.1-P	AT1G73360.1	21798944
AT4G17710.1	Bra015996.1-P	AT1G73360.1	21798944
AT4G17710.1	Bra001412.1-P	AT3G11590.1	21798944
AT4G17710.1	Bra034827.1-P	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76559	Canola	nucleus	99.32	99.32
AT4G17710.1	Thale cress	nucleus	65.53	67.84
Bra017519.1-P	Field mustard	nucleus	59.54	53.55
Bra024984.1-P	Field mustard	nucleus	57.36	52.96
VIT_02s0012g02030.t01	Wine grape	nucleus	52.86	48.62
KRH74360	Soybean	nucleus	51.36	47.78
KRH39579	Soybean	nucleus	51.23	47.0
PGSC0003DMT400006155	Potato	nucleus	48.09	46.2
GSMUA_Achr5P14100_001	Banana	nucleus	46.32	44.97
Solyc08g076370.2.1	Tomato	nucleus	51.36	44.77
GSMUA_Achr4P19010_001	Banana	nucleus	47.14	43.2
Os10t0575600-01	Rice	nucleus	47.68	39.68
KXG38837	Sorghum	nucleus	47.41	39.46
HORVU1Hr1G050620.2	Barley	nucleus	47.55	39.44
Bra000960.1-P	Field mustard	extracellular	6.27	39.32
TraesCS1D01G197300.1	Wheat	nucleus	47.28	39.3
TraesCS1A01G193400.1	Wheat	nucleus, plastid	46.73	39.29
Bra000807.1-P	Field mustard	nucleus	31.88	39.2
Bra016578.1-P	Field mustard	nucleus	36.38	39.04
Bra015401.1-P	Field mustard	nucleus	38.28	39.03
Bra032478.1-P	Field mustard	nucleus	38.15	38.94
Zm00001d030069_P004	Maize	nucleus	46.87	38.91
Bra003846.1-P	Field mustard	nucleus	37.33	38.87
TraesCS1B01G208400.1	Wheat	nucleus	47.0	38.76
Bra015996.1-P	Field mustard	nucleus	37.19	38.08
Bra025938.1-P	Field mustard	nucleus	35.56	37.61
Bra038757.1-P	Field mustard	nucleus	36.24	36.69
Bra029527.1-P	Field mustard	nucleus	37.06	36.51
Bra020872.1-P	Field mustard	nucleus	36.92	36.23
Bra013556.1-P	Field mustard	nucleus	32.29	34.35
Bra028295.1-P	Field mustard	nucleus	30.79	33.14
Bra037355.1-P	Field mustard	nucleus	35.29	32.78
Bra005588.1-P	Field mustard	nucleus	30.93	32.24
Bra004934.1-P	Field mustard	nucleus	34.06	31.81
Bra003439.1-P	Field mustard	nucleus	33.92	31.72
Bra003535.1-P	Field mustard	nucleus	31.88	31.2
Bra021779.1-P	Field mustard	nucleus	30.79	31.04
Bra020066.1-P	Field mustard	nucleus	27.25	29.33
Bra023611.1-P	Field mustard	nucleus	27.79	28.94
Bra032003.1-P	Field mustard	nucleus	27.11	28.88
Bra003213.1-P	Field mustard	nucleus	27.25	28.17
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	26.57	26.97
Bra021363.1-P	Field mustard	nucleus	25.61	25.86
Bra013898.1-P	Field mustard	nucleus	21.93	25.84
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	6.13	15.73

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra021035	EnsemblPlants:Bra021035.1	EnsemblPlants:Bra021035.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4DWY9	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00025470A8	SEG:seg

Description

AT4G17710 (E=1e-240) HDG4 | HDG4 (HOMEODOMAIN GLABROUS 4); DNA binding / transcription factor

Coordinates

chrA08:-:10310069..10313294

Molecular Weight (calculated)

82236.1 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.328

Length

734 amino acids

Sequence
(BLAST)

001: MYEDHQVAKS GKEGGHMVTN YSDNIFGSAS SSPTGTVQNP DFKLSTFLNP NFSYVIPKEE YGMMSMTENG SAWSGNNPVE DSAIEQQLPP VKKKRLHRHS
101: THQIQEMEAF FKVNPHPNDD DKTRLSEELG LTPLQVKFWF QNRRNQIKIE QDRSDNKMLK AENETLKTEN RKLQFDLQRL SCSSCGGSRD KLHLENYRLR
201: QELDRLHSIA SLMNPCLPPP ETACLFPDMK DNITNNLLIA KEDKAVAMDL AVSCVQELAK MCATNEPLWN KKGSDNEIIS LNEDVYKKMF QWPSVDDNHF
301: RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIISSGVS GASGSLLLMY AELQVPSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL
401: IKPASGITTT DQYRRMPSGF IIQDMSNGYS QITWVEHVEV EEKHVHHEMV REYVESGAAF GAERWLAVLR RQCERMPSLM ATNITDLGVI PSVEAKRKLM
501: KLSQSMVRTY CLTISNSYGQ ALSESPKETV RITTRKVCGG VVLCGVSTTL LPYSHHQVFD FLRHDHGRSQ MEEMFNENPF QEVAHIENGS HPGNCISLLH
601: FHGASSSNNV EWMLQETCTD NSGSLVVYST VHANAVQLAM SGEDPSRIPL LPLGFSVVPV NQPHVVEGIS VNLDSCLLTV AIQVLVSNAT TATLNLSTTV
701: INNRICSTVY RISSALGSPL LPEIPSSFKQ EISN

Best Arabidopsis Sequence Match ( AT4G17710.1 )
(BLAST)

001: METKDKKEKG HMVLNSDNVF GSVSSSPTTT IQNPNYFTSF ENPNFPYIFP KEEYEVMSKI ESGSGKSTGS GHDPVENTAI EQEPPAAKKK RYHRHTASQI
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN

Arabidopsis Description

HDG4Homeobox-leucine zipper protein HDG4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7H4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.