Factsheet for Bra013898.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013898.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25530.1	Bra013898.1-P	AT4G25530.1	17189287

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89416	Canola	nucleus	97.75	93.84
CDX94443	Canola	cytosol	89.09	88.38
CDX89415	Canola	cytosol, mitochondrion	23.76	83.15
AT4G25530.1	Thale cress	nucleus	50.24	45.63
Bra000960.1-P	Field mustard	extracellular	7.06	37.61
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	17.01	34.87
Bra028295.1-P	Field mustard	nucleus	35.63	32.55
PGSC0003DMT400062468	Potato	cytosol	17.82	31.09
PGSC0003DMT400028197	Potato	cytosol	15.89	29.73
KRH35356	Soybean	nucleus	34.83	28.37
PGSC0003DMT400076898	Potato	cytosol	22.47	28.28
KRG91457	Soybean	nucleus	35.15	28.19
Bra037355.1-P	Field mustard	nucleus	34.99	27.59
Bra004934.1-P	Field mustard	nucleus	34.35	27.23
Bra032478.1-P	Field mustard	nucleus	31.14	26.98
Bra000807.1-P	Field mustard	nucleus	25.84	26.97
Bra015401.1-P	Field mustard	nucleus	31.14	26.94
Bra003439.1-P	Field mustard	nucleus	33.87	26.88
KRH09109	Soybean	plastid	33.39	26.84
Bra038757.1-P	Field mustard	nucleus	31.14	26.76
Bra029527.1-P	Field mustard	nucleus	31.62	26.44
Bra020872.1-P	Field mustard	nucleus	31.62	26.34
KRH38560	Soybean	nucleus	32.58	26.16
VIT_16s0100g00670.t01	Wine grape	nucleus	32.58	25.93
PGSC0003DMT400086035	Potato	nucleus	27.13	25.72
Bra005588.1-P	Field mustard	nucleus	29.05	25.71
Solyc06g035940.2.1	Tomato	nucleus	27.61	25.44
PGSC0003DMT400042908	Potato	nucleus	20.22	25.3
Solyc06g050160.2.1	Tomato	nucleus	26.48	25.27
PGSC0003DMT400037055	Potato	nucleus	32.58	25.0
Bra016578.1-P	Field mustard	nucleus	27.45	25.0
Solyc03g026070.2.1	Tomato	nucleus	32.26	24.91
Bra003846.1-P	Field mustard	nucleus	27.93	24.68
Bra015996.1-P	Field mustard	nucleus	27.77	24.13
Bra025938.1-P	Field mustard	nucleus	26.32	23.63
PGSC0003DMT400080861	Potato	nucleus	17.34	23.53
Bra021779.1-P	Field mustard	nucleus	27.45	23.49
Bra013556.1-P	Field mustard	nucleus	25.68	23.19
PGSC0003DMT400028195	Potato	nucleus	13.8	22.57
Bra003535.1-P	Field mustard	nucleus	26.97	22.4
PGSC0003DMT400076902	Potato	nucleus	24.08	22.39
Bra021035.1-P	Field mustard	nucleus	25.84	21.93
Bra020066.1-P	Field mustard	nucleus	23.43	21.41
Bra032003.1-P	Field mustard	nucleus	23.6	21.34
Bra003213.1-P	Field mustard	nucleus	23.92	20.99
Bra023611.1-P	Field mustard	nucleus	23.6	20.85
Bra017519.1-P	Field mustard	nucleus	27.13	20.71
Bra021363.1-P	Field mustard	nucleus	23.6	20.22
Bra024984.1-P	Field mustard	nucleus	25.68	20.13
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	23.11	19.92
PGSC0003DMT400092271	Potato	nucleus	7.7	18.11
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	2.57	5.59

Protein Annotations

MapMan:15.5.3.3	EnsemblPlantsGene:Bra013898	EnsemblPlants:Bra013898.1	EnsemblPlants:Bra013898.1-P	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006349	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009791	GO:GO:0009908	GO:GO:0009911	GO:GO:0009987	GO:GO:0031047
GO:GO:0040029	GO:GO:0042803	InterPro:IPR002913	UniProt:M4DBN8	PFAM:PF01852	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF520	SMART:SM00234	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002546A01

Description

AT4G25530 (E=4e-099) FWA, HDG6 | FWA; DNA binding / protein binding / protein homodimerization/ transcription factor

Coordinates

chrA01:+:8353073..8355739

Molecular Weight (calculated)

69034.7 Da

IEP (calculated)

4.368

GRAVY (calculated)

-0.279

Length

623 amino acids

Sequence
(BLAST)

001: MNGQEDDYDD VFRYISSPSF MGIAEDDEIN DTMGTTFGAG DQDGGNTIRN IVPIPQQNQE PENIYQECPH PMGTQARVDD IQNAPVERDS FINDLLVSLS
101: SPLGNALPAY DSFVDDDVLD IPAPPSSPTL MLNPGSDLST ELGPMINDRS TSMVNPHATQ PGNDAPQDKV DSGGETSPVN INSLLELADI AMNELIMLGE
201: VNSPSWIIDS SSKRVTLDYQ EYKSFFKNGF EKPPGYVIEA SRETGTVHME CLPLVKTFTT DNWINVFAPI VPVTSIHNLI PKDSGGLRSG SLRLITAEFQ
301: VISPLVPKRQ VKFLRYCKML RVGFWVVVDF TPRQENLNFS SDDGSYRLPS GVIIEDCGNG YSEVKWIEQI EYDESLIPQL PELLISSRIG LGAKRWFTTL
401: QRHCENISTL ASINLDEIYP GLSSKVATEI VKLAQRMTIN YYLCITASPA SIWKSNDSES ARQDIRVMIR KNNVGEHTRI VLSAATSLWL PVSKKTAFDF
501: LINPSFRNQW DILAIDEPGN SVLQETWNDA SGALLVYAPV DMEKILASEN SNSVQILPSG FSILPDGGGE TDPNRSRVGC LLTLGYQMLH SVKPTEDVDQ
601: DFVKKVERLM DRTMGKIKSA LSR

Best Arabidopsis Sequence Match ( AT4G25530.1 )
(BLAST)

001: MNGQGDLDAV GNIPKPGEAE GDEIDMINDM SGVNDQDGGR MRRTHRRTAY QTQELENFYM ENPHPTEEQR YELGQRLNMG VNQVKNWFQN KRNLEKINND
101: HLENVTLREE HDRLLATQDQ LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE QAPSSSSNPG INATPVLDFS
201: GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP
301: IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA
401: EYNESHIHQL YQPLIGYGIG LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV DKWQKIQVEN VAQNMSFMIR
501: KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN
601: SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI QGTVKSVETL MAHTIVKIKS ALDLQT

Arabidopsis Description

HDG6Homeodomain-containing transcription factor FWA [Source:UniProtKB/TrEMBL;Acc:B5BPE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.