Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25530.1 | CDX89415 | AT4G25530.1 | 17189287 |
| AT4G25530.1 | CDX89416 | AT4G25530.1 | 17189287 |
| AT4G25530.1 | CDX94443 | AT4G25530.1 | 17189287 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89415 | Canola | cytosol, mitochondrion | 26.96 | 98.31 |
| Bra013898.1-P | Field mustard | nucleus | 93.84 | 97.75 |
| CDX94443 | Canola | cytosol | 88.91 | 91.88 |
| AT4G25530.1 | Thale cress | nucleus | 49.92 | 47.23 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 16.64 | 35.53 |
| CDY31916 | Canola | nucleus | 34.82 | 33.58 |
| CDY00515 | Canola | nucleus | 34.67 | 33.43 |
| PGSC0003DMT400062468 | Potato | cytosol | 17.41 | 31.65 |
| PGSC0003DMT400028197 | Potato | cytosol | 15.41 | 30.03 |
| KRH35356 | Soybean | nucleus | 34.98 | 29.67 |
| CDY18903 | Canola | nucleus | 32.2 | 29.65 |
| CDX74762 | Canola | nucleus | 32.2 | 29.52 |
| PGSC0003DMT400076898 | Potato | cytosol | 22.5 | 29.49 |
| KRG91457 | Soybean | nucleus | 35.29 | 29.47 |
| CDY39874 | Canola | plasma membrane | 8.63 | 29.17 |
| CDY27417 | Canola | nucleus | 31.9 | 28.99 |
| CDY51143 | Canola | nucleus | 35.13 | 28.86 |
| CDX67855 | Canola | nucleus | 34.21 | 28.46 |
| CDY07201 | Canola | nucleus | 34.51 | 28.43 |
| CDX74347 | Canola | nucleus | 34.67 | 28.37 |
| CDX90879 | Canola | nucleus | 31.28 | 28.35 |
| CDX94054 | Canola | nucleus | 30.35 | 28.35 |
| CDX98703 | Canola | nucleus | 30.35 | 28.35 |
| CDX91894 | Canola | nucleus | 34.67 | 28.34 |
| CDX76399 | Canola | nucleus | 31.12 | 28.25 |
| CDY21319 | Canola | nucleus | 31.12 | 28.21 |
| CDY06167 | Canola | nucleus | 31.28 | 28.19 |
| CDY45684 | Canola | nucleus | 33.9 | 28.06 |
| CDY16639 | Canola | nucleus | 31.59 | 27.97 |
| CDX94586 | Canola | nucleus | 31.43 | 27.87 |
| KRH09109 | Soybean | plastid | 32.97 | 27.61 |
| CDY10041 | Canola | nucleus | 31.59 | 27.44 |
| CDY30748 | Canola | endoplasmic reticulum | 24.65 | 27.26 |
| CDY12213 | Canola | nucleus | 29.89 | 27.25 |
| CDY66622 | Canola | nucleus | 30.66 | 27.22 |
| VIT_16s0100g00670.t01 | Wine grape | nucleus | 32.67 | 27.08 |
| CDY62389 | Canola | cytosol | 20.34 | 26.99 |
| CDY48272 | Canola | nucleus | 29.28 | 26.99 |
| KRH38560 | Soybean | nucleus | 32.2 | 26.93 |
| PGSC0003DMT400086035 | Potato | nucleus | 27.12 | 26.79 |
| Solyc06g035940.2.1 | Tomato | nucleus | 27.89 | 26.78 |
| CDX96744 | Canola | nucleus | 27.73 | 26.75 |
| CDX79091 | Canola | nucleus | 30.66 | 26.68 |
| CDY42097 | Canola | nucleus | 20.96 | 26.31 |
| Solyc06g050160.2.1 | Tomato | nucleus | 26.35 | 26.19 |
| CDX83884 | Canola | nucleus | 27.43 | 25.99 |
| CDY69499 | Canola | cytosol | 12.02 | 25.66 |
| PGSC0003DMT400037055 | Potato | nucleus | 32.05 | 25.62 |
| CDX68229 | Canola | nucleus | 27.73 | 25.6 |
| Solyc03g026070.2.1 | Tomato | nucleus | 31.74 | 25.53 |
| PGSC0003DMT400042908 | Potato | nucleus | 19.57 | 25.5 |
| CDY26204 | Canola | nucleus | 24.96 | 25.43 |
| CDY11109 | Canola | nucleus | 27.43 | 25.07 |
| CDY49515 | Canola | plasma membrane | 31.12 | 24.91 |
| CDY26205 | Canola | nucleus | 26.35 | 24.78 |
| CDX96471 | Canola | nucleus | 27.27 | 24.65 |
| CDY19185 | Canola | nucleus | 25.89 | 24.63 |
| CDX72984 | Canola | nucleus | 27.12 | 24.62 |
| CDY19129 | Canola | nucleus | 27.43 | 24.48 |
| CDY46842 | Canola | nucleus | 31.12 | 24.34 |
| CDY15339 | Canola | nucleus | 27.27 | 24.21 |
| PGSC0003DMT400080861 | Potato | nucleus | 16.8 | 23.75 |
| PGSC0003DMT400076902 | Potato | nucleus | 24.19 | 23.43 |
| PGSC0003DMT400028195 | Potato | nucleus | 13.41 | 22.83 |
| CDX76559 | Canola | nucleus | 25.58 | 22.62 |
| CDY08866 | Canola | nucleus | 25.58 | 22.55 |
| CDY67945 | Canola | nucleus | 23.73 | 22.35 |
| CDY43137 | Canola | nucleus | 23.57 | 22.21 |
| CDY71572 | Canola | nucleus | 13.41 | 22.14 |
| CDX79408 | Canola | nucleus | 26.5 | 22.05 |
| CDX67929 | Canola | nucleus | 26.35 | 21.84 |
| CDY43458 | Canola | nucleus | 27.27 | 21.8 |
| CDY53691 | Canola | nucleus | 23.73 | 21.69 |
| CDY03177 | Canola | nucleus | 27.43 | 21.55 |
| CDX77711 | Canola | nucleus | 27.27 | 21.51 |
| CDY42301 | Canola | nucleus | 22.65 | 21.3 |
| CDX85461 | Canola | cytosol | 23.11 | 21.28 |
| CDY44946 | Canola | nucleus | 20.96 | 20.99 |
| CDY33492 | Canola | nucleus | 25.73 | 20.98 |
| CDY21211 | Canola | nucleus | 22.19 | 20.75 |
| CDY49937 | Canola | nucleus | 22.03 | 20.61 |
| CDY02713 | Canola | nucleus | 23.42 | 20.57 |
| CDY16938 | Canola | nucleus | 20.49 | 20.15 |
| PGSC0003DMT400092271 | Potato | nucleus | 7.4 | 18.11 |
| CDY23096 | Canola | nucleus | 3.24 | 15.91 |
Protein Annotations
| EnsemblPlants:CDX89416 | EnsemblPlantsGene:GSBRNA2T00149657001 | GO:A0A078DJN4 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| InterPro:IPR002913 | InterPro:START_lipid-bd_dom | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF520 | PFAM:PF01852 | PFscan:PS50848 |
| ProteinID:CDX89416 | ProteinID:CDX89416.1 | SMART:SM00234 | SUPFAM:SSF55961 | UniParc:UPI0004EF37EA | MapMan:15.5.3.3 |
Description
BnaA01g14770D
Coordinates
chrLK031858:-:1478411..1481171
Molecular Weight (calculated)
72294.6 Da
IEP (calculated)
4.413
GRAVY (calculated)
-0.317
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGQEDDYDD VFRYISSPSF MGIAEDDENN DTMGTTFGAG DQDGGNTIRN IMPIPQQNQE PENIYQEFPH PMGTQARVDD IQRAPVERDS SINDLLVSLS
101: SPLGNALPAY DSFVDDDVLD IPAPPSSPTL MLNPGSDLST ELGPMINDRS TSMVNPHDTQ PGNDAPQDKV DCGGETSPIN INSLLELADI AMNELIMLGE
201: VNSPSWIIDS TSKRVTLDYQ EYKSFFKNGF EKPPGYVIEA SRETGTVHME CLPLVKTFTT DNWINVFAPI VPVTSIHNLI PKDSGGLRSG SLRLITAEFQ
301: VISPLVPKRQ VKFLRYCKML REGFWVVVDF TPRQENMNFS SDDGSYRLPS GVIIEDCGNG YSEVKWIEQI EYDENLIPQL PELLISSRIG LGAKRWFTTL
401: QRHCENISTL ASINLDEIYP GLSSKVATEI VKLAQRMTIN YYLCITASPA SIWKSNDSES ARQDIRVMIR KNNVGEHTRI VLSAATSLWL PVSKKTAFDF
501: LINPSFRNQW DILAIDVTTS IEEKIKIQKS RFHRNEVSLL QIEPGNSVLQ ETWNDASGAL LVYAPVDMEK ILASENSDSV QILPSGFSIL PDGGGETDPN
601: RSRVGCLLTL GYQMLHSVKP TEDVDQDFVK KVELLMDRTM GKIKSALSR
101: SPLGNALPAY DSFVDDDVLD IPAPPSSPTL MLNPGSDLST ELGPMINDRS TSMVNPHDTQ PGNDAPQDKV DCGGETSPIN INSLLELADI AMNELIMLGE
201: VNSPSWIIDS TSKRVTLDYQ EYKSFFKNGF EKPPGYVIEA SRETGTVHME CLPLVKTFTT DNWINVFAPI VPVTSIHNLI PKDSGGLRSG SLRLITAEFQ
301: VISPLVPKRQ VKFLRYCKML REGFWVVVDF TPRQENMNFS SDDGSYRLPS GVIIEDCGNG YSEVKWIEQI EYDENLIPQL PELLISSRIG LGAKRWFTTL
401: QRHCENISTL ASINLDEIYP GLSSKVATEI VKLAQRMTIN YYLCITASPA SIWKSNDSES ARQDIRVMIR KNNVGEHTRI VLSAATSLWL PVSKKTAFDF
501: LINPSFRNQW DILAIDVTTS IEEKIKIQKS RFHRNEVSLL QIEPGNSVLQ ETWNDASGAL LVYAPVDMEK ILASENSDSV QILPSGFSIL PDGGGETDPN
601: RSRVGCLLTL GYQMLHSVKP TEDVDQDFVK KVELLMDRTM GKIKSALSR
001: MNGQGDLDAV GNIPKPGEAE GDEIDMINDM SGVNDQDGGR MRRTHRRTAY QTQELENFYM ENPHPTEEQR YELGQRLNMG VNQVKNWFQN KRNLEKINND
101: HLENVTLREE HDRLLATQDQ LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE QAPSSSSNPG INATPVLDFS
201: GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP
301: IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA
401: EYNESHIHQL YQPLIGYGIG LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV DKWQKIQVEN VAQNMSFMIR
501: KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN
601: SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI QGTVKSVETL MAHTIVKIKS ALDLQT
101: HLENVTLREE HDRLLATQDQ LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE QAPSSSSNPG INATPVLDFS
201: GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP
301: IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA
401: EYNESHIHQL YQPLIGYGIG LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV DKWQKIQVEN VAQNMSFMIR
501: KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN
601: SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI QGTVKSVETL MAHTIVKIKS ALDLQT
Arabidopsis Description
HDG6Homeodomain-containing transcription factor FWA [Source:UniProtKB/TrEMBL;Acc:B5BPE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.