Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76559 | Canola | nucleus | 95.38 | 95.64 |
| AT4G17710.1 | Thale cress | nucleus | 65.9 | 68.41 |
| CDY43458 | Canola | nucleus | 59.92 | 54.31 |
| CDY33492 | Canola | nucleus | 58.29 | 53.89 |
| CDX77711 | Canola | nucleus | 60.05 | 53.71 |
| CDY03177 | Canola | nucleus | 60.05 | 53.51 |
| VIT_02s0012g02030.t01 | Wine grape | nucleus | 53.4 | 49.25 |
| KRH74360 | Soybean | nucleus | 51.9 | 48.42 |
| KRH39579 | Soybean | nucleus | 51.9 | 47.75 |
| PGSC0003DMT400006155 | Potato | nucleus | 48.91 | 47.12 |
| Solyc08g076370.2.1 | Tomato | nucleus | 52.31 | 45.72 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 46.74 | 45.5 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 47.96 | 44.07 |
| Os10t0575600-01 | Rice | nucleus | 48.23 | 40.25 |
| KXG38837 | Sorghum | nucleus | 47.83 | 39.91 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 47.83 | 39.86 |
| TraesCS1A01G193400.1 | Wheat | nucleus, plastid | 47.28 | 39.86 |
| HORVU1Hr1G050620.2 | Barley | nucleus | 47.83 | 39.77 |
| CDX96744 | Canola | nucleus | 36.28 | 39.67 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 47.69 | 39.44 |
| Zm00001d030069_P004 | Maize | nucleus | 47.28 | 39.37 |
| CDX68229 | Canola | nucleus | 37.36 | 39.12 |
| CDY11109 | Canola | nucleus | 37.5 | 38.87 |
| CDY26204 | Canola | nucleus | 33.56 | 38.78 |
| CDX83884 | Canola | nucleus | 36.01 | 38.69 |
| CDY06167 | Canola | nucleus | 37.77 | 38.61 |
| CDX98703 | Canola | nucleus | 36.28 | 38.42 |
| CDY27417 | Canola | nucleus | 37.23 | 38.38 |
| CDX94054 | Canola | nucleus | 36.14 | 38.27 |
| CDY19185 | Canola | nucleus | 35.46 | 38.27 |
| CDX90879 | Canola | nucleus | 37.23 | 38.27 |
| CDY21319 | Canola | nucleus | 37.09 | 38.13 |
| CDX76399 | Canola | nucleus | 36.96 | 38.04 |
| CDX96471 | Canola | nucleus | 37.09 | 38.02 |
| CDY26205 | Canola | nucleus | 35.6 | 37.97 |
| CDY23096 | Canola | nucleus | 6.79 | 37.88 |
| CDX72984 | Canola | nucleus | 36.68 | 37.76 |
| CDY66622 | Canola | nucleus | 37.5 | 37.76 |
| CDY42097 | Canola | nucleus | 26.49 | 37.72 |
| CDY10041 | Canola | nucleus | 37.91 | 37.35 |
| CDY16639 | Canola | nucleus | 36.96 | 37.11 |
| CDY71572 | Canola | nucleus | 19.7 | 36.9 |
| CDX79091 | Canola | nucleus | 37.36 | 36.86 |
| CDX94586 | Canola | nucleus | 36.55 | 36.75 |
| CDX74762 | Canola | nucleus | 33.42 | 34.75 |
| CDY18903 | Canola | nucleus | 33.02 | 34.47 |
| CDY49515 | Canola | plasma membrane | 37.91 | 34.4 |
| CDY46842 | Canola | nucleus | 37.91 | 33.61 |
| CDY07201 | Canola | nucleus | 35.46 | 33.12 |
| CDY51143 | Canola | nucleus | 35.46 | 33.04 |
| CDY00515 | Canola | nucleus | 30.16 | 32.99 |
| CDX91894 | Canola | nucleus | 35.46 | 32.87 |
| CDY31916 | Canola | nucleus | 30.03 | 32.84 |
| CDY48272 | Canola | nucleus | 31.39 | 32.81 |
| CDY12213 | Canola | nucleus | 31.66 | 32.72 |
| CDX74347 | Canola | nucleus | 35.19 | 32.66 |
| CDX67855 | Canola | nucleus | 34.38 | 32.44 |
| CDY45684 | Canola | nucleus | 34.38 | 32.27 |
| CDY19129 | Canola | nucleus | 30.98 | 31.36 |
| CDY15339 | Canola | nucleus | 31.11 | 31.33 |
| CDY30748 | Canola | endoplasmic reticulum | 24.46 | 30.66 |
| CDX67929 | Canola | nucleus | 31.93 | 30.01 |
| CDY67945 | Canola | nucleus | 27.99 | 29.9 |
| CDX79408 | Canola | nucleus | 31.66 | 29.87 |
| CDY39874 | Canola | plasma membrane | 7.74 | 29.69 |
| CDY42301 | Canola | nucleus | 27.72 | 29.57 |
| CDY44946 | Canola | nucleus | 25.95 | 29.48 |
| CDY62389 | Canola | cytosol | 19.57 | 29.45 |
| CDY43137 | Canola | nucleus | 27.45 | 29.32 |
| CDX85461 | Canola | cytosol | 27.72 | 28.94 |
| CDY53691 | Canola | nucleus | 27.31 | 28.31 |
| CDY02713 | Canola | nucleus | 27.72 | 27.6 |
| CDX89415 | Canola | cytosol, mitochondrion | 6.66 | 27.53 |
| CDY16938 | Canola | nucleus | 24.18 | 26.97 |
| CDY49937 | Canola | nucleus | 24.73 | 26.22 |
| CDY69499 | Canola | cytosol | 10.73 | 25.99 |
| CDX94443 | Canola | cytosol | 22.15 | 25.96 |
| CDY21211 | Canola | nucleus | 24.32 | 25.79 |
| CDX89416 | Canola | nucleus | 22.55 | 25.58 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078F641 | UniProt:A0A078F641 | EnsemblPlants:CDY08866 | ProteinID:CDY08866 |
| ProteinID:CDY08866.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00000842001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF267 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI0004EE2650 | SEG:seg | : | : | : | : |
Description
BnaC08g10960DBnaC08g10960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F641]
Coordinates
chrLK031990:-:26104..29319
Molecular Weight (calculated)
82316.2 Da
IEP (calculated)
6.841
GRAVY (calculated)
-0.315
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MYEDHQVAKS GKEGGHMVTN YSDNIFGSAS SSPTGTVQNP NFKRSTFLNP NFSYVIPKEE YGMMSMTENG SAWSGNNPVE DSAIEQQLPP VKKKRLHRHS
101: THQIQEMEAF FKVNPHPNDD DKTRLSEELG LTPLQVKFWF QNRRNQIKTQ QDRTDNVMLK AENETLKTEN RKLQFDLQRL SCSSCGGSRE KLHLENSRLR
201: QELDRLHSIA SLMNPCLPPP QTARLFPDMN DNITNNLLIT EEDKAIAMDL AVSCVQELAK MCATNEPLWS KKGSENDRIS LNEDVYKKMF QWPSVDDNHF
301: RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIIYSGVS GASGSLLLMY AELQVLSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL
401: IKPASGITTT DQYRRKPSGF IIQDMSNGYS QITWVEHVEV EEKHVHHKMV REYVESGAAF GAERWLAVLR RQCERMASLM ATNITDLGVI PSVEAKRKLM
501: KLSQSMVRTY CLTISNSYGQ ALSESPKETV IITTRKVCGG VVLCGVSTTL LPYSHHQVFD LLRHDHGRSQ MEMLFSENPF QEVAHIANGS HPGNCISLLH
601: FHVSGASSSN NVEWMLQETC TDNSGSLVVY STVHANAVQL AMNGEDPSRI SLLPLGFSVV PVNQPHVVEG ISVNLDSCLL TVAIQVLVSN ATTAALNLST
701: TAINNRICST VYRISSALGS PLLPEIPSSF KQEISN
101: THQIQEMEAF FKVNPHPNDD DKTRLSEELG LTPLQVKFWF QNRRNQIKTQ QDRTDNVMLK AENETLKTEN RKLQFDLQRL SCSSCGGSRE KLHLENSRLR
201: QELDRLHSIA SLMNPCLPPP QTARLFPDMN DNITNNLLIT EEDKAIAMDL AVSCVQELAK MCATNEPLWS KKGSENDRIS LNEDVYKKMF QWPSVDDNHF
301: RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIIYSGVS GASGSLLLMY AELQVLSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL
401: IKPASGITTT DQYRRKPSGF IIQDMSNGYS QITWVEHVEV EEKHVHHKMV REYVESGAAF GAERWLAVLR RQCERMASLM ATNITDLGVI PSVEAKRKLM
501: KLSQSMVRTY CLTISNSYGQ ALSESPKETV IITTRKVCGG VVLCGVSTTL LPYSHHQVFD LLRHDHGRSQ MEMLFSENPF QEVAHIANGS HPGNCISLLH
601: FHVSGASSSN NVEWMLQETC TDNSGSLVVY STVHANAVQL AMNGEDPSRI SLLPLGFSVV PVNQPHVVEG ISVNLDSCLL TVAIQVLVSN ATTAALNLST
701: TAINNRICST VYRISSALGS PLLPEIPSSF KQEISN
001: METKDKKEKG HMVLNSDNVF GSVSSSPTTT IQNPNYFTSF ENPNFPYIFP KEEYEVMSKI ESGSGKSTGS GHDPVENTAI EQEPPAAKKK RYHRHTASQI
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN
Arabidopsis Description
HDG4Homeobox-leucine zipper protein HDG4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.